RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 SEC14L3Q9UDX4 400 aa4.05□□□□□ -1.76
HMGB1P23-201ENST00000518743 MFHAS1Q9Y4C4 1052 aa4.05□□□□□ -1.76
HMGB1P23-201ENST00000518743 CSAG2Q9Y5P2 127 aa4.05□□□□□ -1.76
HMGB1P23-201ENST00000518743 TRBV4-1A0A0J9YWV2 114 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 LOC100653049A0A140TA62 436 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 TTC26A0AVF1 554 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 TMEM89A2RUT3 159 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 CFLARO15519 480 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 P2RX6O15547 441 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 NUDT21O43809 227 aaKnown RBP4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 TBX19O60806 448 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 KRT34O76011 436 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 PPP1R3DO95685 299 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 PRDX6P30041 224 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 FEN1P39748 380 aaKnown RBP4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 GBX2P52951 348 aaPredicted RBP4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 TRA2BP62995 288 aaKnown RBP4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 HERVK_113P63132 956 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 ERVK-8P63133 956 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 PMP22Q01453 160 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 EFTUD2Q15029 972 aaKnown RBP eCLIP4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 P2RY6Q15077 328 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 ZBTB6Q15916 424 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 EXT1Q16394 746 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 CLPPQ16740 277 aaPredicted RBP4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 SLC36A3Q495N2 470 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 LIPNQ5VXI9 398 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 SLC35E4Q6ICL7 350 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 CAPN13Q6MZZ7 669 aaPredicted RBP4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 RBMS3Q6XE24 437 aaKnown RBP4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 BNIPLQ7Z465 357 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 TMEM86AQ8N2M4 240 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 RFLNBQ8N5W9 214 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 STPG4Q8N801 248 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 TBCKQ8TEA7 893 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 SLC5A11Q8WWX8 675 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 TMEM37Q8WXS4 190 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 OR8D1Q8WZ84 308 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 NR4A3Q92570 626 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 TMEM45BQ96B21 275 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 SENP5Q96HI0 755 aaPredicted RBP4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 CXorf58Q96LI9 332 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 AGAP3Q96P47 875 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 PKMYT1Q99640 499 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 NDUFAF3Q9BU61 184 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 ERVK-6Q9BXR3 956 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 SLC17A9Q9BYT1 436 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 WWP1Q9H0M0 922 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 MTHFD2LQ9H903 347 aaPredicted RBP4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 ACTR8Q9H981 624 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 FBXO8Q9NRD0 319 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 INTS9Q9NV88 658 aaKnown RBP4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 MED17Q9NVC6 651 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 ATAD3AQ9NVI7 634 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 ERVW-1Q9UQF0 538 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 OR1A2Q9Y585 309 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 CADP27708 2225 aa4.04□□□□□ -1.76
HMGB1P23-201ENST00000518743 CHD5Q8TDI0 1954 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 MPDZO75970 2070 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 TRIM49BA6NDI0 452 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 PP2D1A8MPX8 630 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 E9PMD0 336 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 SGK494L7N484 410 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 OVOL3O00110 214 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 KPNA3O00505 521 aaPredicted RBP4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 PDXKO00764 312 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 SURF4O15260 269 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 RAD51BO15315 384 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 INSIG1O15503 277 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 SMAD6O43541 496 aaKnown RBP4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 TLX2O43763 284 aaPredicted RBP4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 PCDH7O60245 1069 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 KIAA0513O60268 411 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 MTRF1O75570 445 aaKnown RBP4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 KRT36O76013 467 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 NDUFA7O95182 113 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 CRYAAP02489 173 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 ALPLP05186 524 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 GPIP06744 558 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 LYNP07948 512 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 HOXD4P09016 255 aaPredicted RBP4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 EPB41P11171 864 aaKnown RBP4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 EZRP15311 586 aaKnown RBP4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 CD1CP29017 333 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 PRDX2P32119 198 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 CD70P32970 193 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 CSKP41240 450 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 TAB1Q15750 504 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 TATDN3Q17R31 274 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 AGKQ53H12 422 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 ZNF311Q5JNZ3 666 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 CFAP157Q5JU67 520 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 SPECC1LQ69YQ0 1117 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 OR4C11Q6IEV9 310 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 FAM199XQ6PEV8 388 aaPredicted RBP4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 SLC25A47Q6Q0C1 308 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 IGFL3Q6UXB1 125 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 C9orf139Q6ZV77 190 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 CHMP1BQ7LBR1 199 aa4.03□□□□□ -1.76
HMGB1P23-201ENST00000518743 TRPT1Q86TN4 253 aaKnown RBP4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms