RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 ARMC4Q5T2S8 1044 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 INO80CQ6PI98 192 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-214ENST00000495485 SMARCD3Q6STE5 483 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 C5orf46Q6UWT4 87 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 ZNF620Q6ZNG0 422 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 Q6ZPB1 254 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-214ENST00000495485 SHISA6Q6ZSJ9 500 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 MRGPREQ86SM8 312 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 OAFQ86UD1 273 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 RAB43Q86YS6 212 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 CCDC71Q8IV32 467 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-214ENST00000495485 ERI1Q8IV48 349 aaKnown RBP9.39□□□□□ -0.91
HDAC3-214ENST00000495485 GID4Q8IVV7 300 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 DND1Q8IYX4 353 aaKnown RBP9.39□□□□□ -0.91
HDAC3-214ENST00000495485 ZNF321PQ8N8H1 164 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 ZNF441Q8N8Z8 693 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 FAM71CQ8NEG0 241 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 NFAM1Q8NET5 270 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-214ENST00000495485 OR2Y1Q8NGV0 311 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 FANK1Q8TC84 345 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 GRHL3Q8TE85 626 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 APH1BQ8WW43 257 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 TMEM234Q8WY98 164 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 GGHQ92820 318 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 MUL1Q969V5 352 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 SGTBQ96EQ0 304 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 TMEM80Q96HE8 168 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 IL4I1Q96RQ9 567 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 SPSB2Q99619 263 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 PRSS27Q9BQR3 290 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 TMEM43Q9BTV4 400 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 DEFB126Q9BYW3 111 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 FN3KQ9H479 309 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 ERGIC3Q9Y282 383 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 MED13Q9UHV7 2174 aa9.39□□□□□ -0.91
HDAC3-214ENST00000495485 KALRNO60229 2985 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 LOC102723996A0A087X1L8 192 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 TRBV11-1A0A0K0K1C0 115 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 TEX51A0A1B0GUA7 166 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 TAF4O00268 1085 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 TP53I11O14683 189 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 PRODHO43272 600 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 KLF4O43474 513 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 HCRTR2O43614 444 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 TLX2O43763 284 aaPredicted RBP9.38□□□□□ -0.91
HDAC3-214ENST00000495485 CDC40O60508 579 aaKnown RBP eCLIP9.38□□□□□ -0.91
HDAC3-214ENST00000495485 BCAS1O75363 584 aaPredicted RBP9.38□□□□□ -0.91
HDAC3-214ENST00000495485 SLC25A12O75746 678 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 NUDT14O95848 222 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 MT-ND2P03891 347 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 HIST1H2ABP04908 130 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 HK1P19367 917 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 PCMT1P22061 227 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 CXCR1P25024 350 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 MSX1P28360 303 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 SLC1A3P43003 542 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 GPR4P46093 362 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 SUMO3P55854 103 aaPredicted RBP9.38□□□□□ -0.91
HDAC3-214ENST00000495485 PRPS1P60891 318 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 SKP2Q13309 424 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 SSPNQ14714 243 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 PGGHGQ32M88 737 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 FNDC7Q5VTL7 733 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 RNLSQ5VYX0 342 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 PLAG1Q6DJT9 500 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 LAIR2Q6ISS4 152 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 FAM198BQ6UWH4 519 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 LINC00114Q6XXX2 140 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 HIST3H2AQ7L7L0 130 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 APCDD1LQ8NCL9 501 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 OR9Q1Q8NGQ5 310 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 M1APQ8TC57 530 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 CT55Q8WUE5 264 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 HIST1H2ACQ93077 130 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 UBE2FQ969M7 185 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 DCBLD2Q96PD2 775 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 ZNF426Q9BUY5 554 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 CDCA4Q9BXL8 241 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 RBM38Q9H0Z9 239 aaKnown RBP9.38□□□□□ -0.91
HDAC3-214ENST00000495485 OR52D1Q9H346 318 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 EGLN3Q9H6Z9 239 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 ACOT13Q9NPJ3 140 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 FKBP14Q9NWM8 211 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 FLRT3Q9NZU0 649 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 ZNF223Q9UK11 482 aaPredicted RBP9.38□□□□□ -0.91
HDAC3-214ENST00000495485 TCFL5Q9UL49 500 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 ICAM5Q9UMF0 924 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 CARD8Q9Y2G2 431 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 NTNG1Q9Y2I2 539 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 PTRH2Q9Y3E5 179 aaKnown RBP9.38□□□□□ -0.91
HDAC3-214ENST00000495485 ZNF337Q9Y3M9 751 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 DOCK10Q96BY6 2186 aa9.38□□□□□ -0.91
HDAC3-214ENST00000495485 LOC101059948A0A1B0GTJ6 334 aa9.37□□□□□ -0.91
HDAC3-214ENST00000495485 RIIAD1A6NNX1 92 aa9.37□□□□□ -0.91
HDAC3-214ENST00000495485 FAM47E-STBD1D6RA91 191 aa9.37□□□□□ -0.91
HDAC3-214ENST00000495485 AGRPO00253 132 aa9.37□□□□□ -0.91
HDAC3-214ENST00000495485 EFSO43281 561 aa9.37□□□□□ -0.91
HDAC3-214ENST00000495485 IDH3BO43837 385 aa9.37□□□□□ -0.91
HDAC3-214ENST00000495485 ICOSLGO75144 302 aa9.37□□□□□ -0.91
HDAC3-214ENST00000495485 ENTPD6O75354 484 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms