RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 GMPPAQ96IJ6 420 aaPredicted RBP10.64□□□□□ -0.71
VPS52-213ENST00000461743 ZNF845Q96IR2 970 aaPredicted RBP10.64□□□□□ -0.71
VPS52-213ENST00000461743 ECSITQ9BQ95 431 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 ENKD1Q9H0I2 346 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 TMEM185BQ9H7F4 350 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 C12orf10Q9HB07 376 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 KLHL28Q9NXS3 571 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 JKAMPQ9P055 326 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 TESQ9UGI8 421 aaKnown RBP10.64□□□□□ -0.71
VPS52-213ENST00000461743 PACSIN3Q9UKS6 424 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 ARL2BPQ9Y2Y0 163 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 HDGFL3Q9Y3E1 203 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 APCP25054 2843 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 ABCA12Q86UK0 2595 aa10.64□□□□□ -0.71
VPS52-213ENST00000461743 NAV2Q8IVL1 2488 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 MAST4O15021 2626 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 LOC100653049A0A140TA62 436 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 A0A1W2PNV4 684 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 NKX2-6A6NCS4 301 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 SYT5O00445 386 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 AP3D1O14617 1153 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 EFNA2O43921 213 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 CXCL13O43927 109 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 ADAM11O75078 769 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 KRT34O76011 436 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 PMS2P2O95744 297 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 C8BP07358 591 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 IL11P20809 199 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 ACAA2P42765 397 aaKnown RBP10.63□□□□□ -0.71
VPS52-213ENST00000461743 GZMMP51124 257 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 CARD18P57730 90 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 NCALDP61601 193 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 SORDQ00796 357 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 VEZF1Q14119 521 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 TMEM176BQ3YBM2 270 aaPredicted RBP10.63□□□□□ -0.71
VPS52-213ENST00000461743 CCDC80Q76M96 950 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 PIGWQ7Z7B1 504 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 LIX1LQ8IVB5 337 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 SLC43A2Q8N370 569 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 ANKS4BQ8N8V4 417 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 FIG4Q92562 907 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 RNASE6Q93091 150 aaKnown RBP10.63□□□□□ -0.71
VPS52-213ENST00000461743 INTS12Q96CB8 462 aaKnown RBP10.63□□□□□ -0.71
VPS52-213ENST00000461743 DDIT4LQ96D03 193 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 ZHX1-C8orf76Q96EF9 292 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 CCT8L2Q96SF2 557 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 HOPXQ9BPY8 73 aaPredicted RBP10.63□□□□□ -0.71
VPS52-213ENST00000461743 GPATCH1Q9BRR8 931 aaKnown RBP10.63□□□□□ -0.71
VPS52-213ENST00000461743 SLC39A3Q9BRY0 314 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 PRRG4Q9BZD6 226 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 ADAM19Q9H013 955 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 EFCAB1Q9HAE3 211 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 CTPS2Q9NRF8 586 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 RLIMQ9NVW2 624 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 SLC13A4Q9UKG4 626 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 EMC9Q9Y3B6 208 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 CHST2Q9Y4C5 530 aa10.63□□□□□ -0.71
VPS52-213ENST00000461743 ANKRD17O75179 2603 aaKnown RBP10.62□□□□□ -0.71
VPS52-213ENST00000461743 TMED7-TICAM2A0A0A6YYA0 188 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 MSTNO14793 375 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 FMO6PO60774 539 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 SS18L1O75177 396 aaPredicted RBP10.62□□□□□ -0.71
VPS52-213ENST00000461743 TNFSF13O75888 250 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 DNAJC8O75937 253 aaPredicted RBP10.62□□□□□ -0.71
VPS52-213ENST00000461743 MFN2O95140 757 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 CD8BP10966 210 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 COX6B1P14854 86 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 GRNP28799 593 aaKnown RBP10.62□□□□□ -0.71
VPS52-213ENST00000461743 SHC1P29353 583 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 RABL3Q5HYI8 236 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 C8orf82Q6P1X6 216 aaPredicted RBP10.62□□□□□ -0.71
VPS52-213ENST00000461743 C5orf46Q6UWT4 87 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 FAM214BQ7L5A3 538 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 RANBP3LQ86VV4 465 aaPredicted RBP10.62□□□□□ -0.71
VPS52-213ENST00000461743 TREML1Q86YW5 311 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 GCNT2Q8N0V5 402 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 CLIP4Q8N3C7 705 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 POU5F2Q8N7G0 328 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 LSMEM1Q8N8F7 131 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 OR6K3Q8NGY3 331 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 OSTF1Q92882 214 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 ZNF524Q96C55 264 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 NPDC1Q9NQX5 325 aaPredicted RBP10.62□□□□□ -0.71
VPS52-213ENST00000461743 OSGIN1Q9UJX0 560 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 TMED7Q9Y3B3 224 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 TACC2O95359 2948 aa10.62□□□□□ -0.71
VPS52-213ENST00000461743 TMEM229AB2RXF0 380 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 EEF1E1-BLOC1S5C9J1V9 151 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 EEF1E1O43324 174 aaKnown RBP10.61□□□□□ -0.71
VPS52-213ENST00000461743 AQP8O94778 261 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 PLGP00747 810 aaPredicted RBP10.61□□□□□ -0.71
VPS52-213ENST00000461743 IFNA14P01570 189 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 GKN3PP0CG01 181 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 TACR3P29371 465 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 AQP1P29972 269 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 DIO1P49895 249 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 NUDT2P50583 147 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 CTBP2P56545 445 aa10.61□□□□□ -0.71
VPS52-213ENST00000461743 RGS8P57771 180 aaPredicted RBP10.61□□□□□ -0.71
VPS52-213ENST00000461743 FOXF2Q12947 444 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms