RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 NR2F1P10589 423 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 IDO1P14902 403 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 IL32P24001 234 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 NR1H2P55055 460 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 CSNK2A1P68400 391 aaPredicted RBP18.37■□□□□ 0.53
SDC1-205ENST00000447124 TXNL4AP83876 142 aaKnown RBP18.37■□□□□ 0.53
SDC1-205ENST00000447124 HPCAP84074 193 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 LRRC74AQ0VAA2 488 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 ABLIM2Q6H8Q1 611 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 Q6ZT83 130 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 CIARTQ8N365 385 aaPredicted RBP18.37■□□□□ 0.53
SDC1-205ENST00000447124 OR9I1Q8NGQ6 314 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 PIWIL2Q8TC59 973 aaKnown RBP18.37■□□□□ 0.53
SDC1-205ENST00000447124 HSD17B8Q92506 261 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 KISS1RQ969F8 398 aaPredicted RBP18.37■□□□□ 0.53
SDC1-205ENST00000447124 PERPQ96FX8 193 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 ZIM2Q9NZV7 527 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 OSGIN1Q9UJX0 560 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 IGKV3D-15A0A087WSY6 115 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 TMEM72A0PK05 275 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 ZNF716A6NP11 495 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 KLF11O14901 512 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 KRT75O95678 551 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 PMS2P2O95744 297 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 INHBBP09529 407 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 IGHV1-2P23083 117 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 PDK3Q15120 406 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 GSTA3Q16772 222 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 NCMAPQ5T1S8 102 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 CSPG4Q6UVK1 2322 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 PRSS57Q6UWY2 283 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 DNAJC14Q6Y2X3 702 aaPredicted RBP18.36■□□□□ 0.53
SDC1-205ENST00000447124 BHLHA15Q7RTS1 189 aaPredicted RBP18.36■□□□□ 0.53
SDC1-205ENST00000447124 GALNT5Q7Z7M9 940 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 CCDC103Q8IW40 242 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 CMIPQ8IY22 773 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 AKAP1Q92667 903 aaKnown RBP eCLIP18.36■□□□□ 0.53
SDC1-205ENST00000447124 RLIMQ9NVW2 624 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 HDGFL3Q9Y3E1 203 aa18.36■□□□□ 0.53
SDC1-205ENST00000447124 TMED7-TICAM2A0A0A6YYA0 188 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 DPRXA6NFQ7 191 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 HS3ST1O14792 307 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 UBDO15205 165 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 ERLIN1O75477 346 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 LYZL6O75951 148 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 ZCCHC18P0CG32 403 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 IMPDH2P12268 514 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 ETFAP13804 333 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 CLK1P49759 484 aaKnown RBP18.35■□□□□ 0.53
SDC1-205ENST00000447124 ANXA11P50995 505 aaKnown RBP18.35■□□□□ 0.53
SDC1-205ENST00000447124 EPGNQ6UW88 154 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 Q71RC1 249 aaPredicted RBP18.35■□□□□ 0.53
SDC1-205ENST00000447124 YTHDF3Q7Z739 585 aaKnown RBP18.35■□□□□ 0.53
SDC1-205ENST00000447124 BIVMQ86UB2 503 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 ZNF611Q8N823 705 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 WDR60Q8WVS4 1066 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 PMM1Q92871 262 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 NEUROG1Q92886 237 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 GSX2Q9BZM3 304 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 TMED7Q9Y3B3 224 aa18.35■□□□□ 0.53
SDC1-205ENST00000447124 SPIN1Q9Y657 262 aaPredicted RBP18.35■□□□□ 0.53
SDC1-205ENST00000447124 DBIP07108 87 aaKnown RBP18.34■□□□□ 0.53
SDC1-205ENST00000447124 TFPTP0C1Z6 253 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 IL7RP16871 459 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 TACR3P29371 465 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 PTH2RP49190 550 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 POLR2JP52435 117 aaKnown RBP18.34■□□□□ 0.53
SDC1-205ENST00000447124 OR2B6P58173 313 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 H3F3AP84243 136 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 EPS8Q12929 822 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 MRPL2Q5T653 305 aaKnown RBP18.34■□□□□ 0.53
SDC1-205ENST00000447124 ADAM5Q6NVV9 412 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 VRK2Q86Y07 508 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 ZNF100Q8IYN0 542 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 VPS33AQ96AX1 596 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 AURKBQ96GD4 344 aaPredicted RBP18.34■□□□□ 0.53
SDC1-205ENST00000447124 Q96MF0 132 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 ADAM19Q9H013 955 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 TPT1P8Q9HAU6 139 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 TRAPPC4Q9Y296 219 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 CHST2Q9Y4C5 530 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 USH1CQ9Y6N9 552 aa18.34■□□□□ 0.53
SDC1-205ENST00000447124 ZC3H12DA2A288 527 aaKnown RBP18.33■□□□□ 0.52
SDC1-205ENST00000447124 FAAHO00519 579 aa18.33■□□□□ 0.52
SDC1-205ENST00000447124 IGHV3-9P01782 118 aa18.33■□□□□ 0.52
SDC1-205ENST00000447124 GKN3PP0CG01 181 aa18.33■□□□□ 0.52
SDC1-205ENST00000447124 PAX1P15863 534 aa18.33■□□□□ 0.52
SDC1-205ENST00000447124 FKBP2P26885 142 aaKnown RBP18.33■□□□□ 0.52
SDC1-205ENST00000447124 ACAA2P42765 397 aaKnown RBP18.33■□□□□ 0.52
SDC1-205ENST00000447124 SLC1A3P43003 542 aa18.33■□□□□ 0.52
SDC1-205ENST00000447124 CRATP43155 626 aa18.33■□□□□ 0.52
SDC1-205ENST00000447124 HTR3AP46098 478 aa18.33■□□□□ 0.52
SDC1-205ENST00000447124 CAPRIN1Q14444 709 aaKnown RBP18.33■□□□□ 0.52
SDC1-205ENST00000447124 AGBL2Q5U5Z8 902 aa18.33■□□□□ 0.52
SDC1-205ENST00000447124 CLIP4Q8N3C7 705 aa18.33■□□□□ 0.52
SDC1-205ENST00000447124 ZNF433Q8N7K0 673 aaPredicted RBP18.33■□□□□ 0.52
SDC1-205ENST00000447124 OR52P1PQ8NH57 321 aa18.33■□□□□ 0.52
SDC1-205ENST00000447124 SLC38A5Q8WUX1 472 aa18.33■□□□□ 0.52
SDC1-205ENST00000447124 ZNF701Q9NV72 531 aaPredicted RBP18.33■□□□□ 0.52
SDC1-205ENST00000447124 TMEM181Q9P2C4 612 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms