RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 SLC38A1Q9H2H9 487 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 MANSC1Q9H8J5 431 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 BCO1Q9HAY6 547 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.43■□□□□ 0.54
SDC1-205ENST00000447124 SLC6A13Q9NSD5 602 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 SLC35A3Q9Y2D2 325 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 TRPC5OSA6NMA1 111 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 CYTIPO60759 359 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 ADAP00813 363 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 CHRM4P08173 479 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 RASGEF1BQ0VAM2 473 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 MAPK11Q15759 364 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 SFRP5Q5T4F7 317 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 SHEQ5VZ18 495 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 C3orf33Q6P1S2 294 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 ADGRG3Q86Y34 549 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 OIT3Q8WWZ8 545 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 IGFBPL1Q8WX77 278 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 TMEM234Q8WY98 164 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 ARL8AQ96BM9 186 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 PLPPR2Q96GM1 343 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 ZNF300Q96RE9 604 aaPredicted RBP18.42■□□□□ 0.54
SDC1-205ENST00000447124 SMR3AQ99954 134 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 TMEM204Q9BSN7 226 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 HDHD5Q9BXW7 423 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 FANCFQ9NPI8 374 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 CTPS2Q9NRF8 586 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 SERINC1Q9NRX5 453 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 CADP27708 2225 aa18.42■□□□□ 0.54
SDC1-205ENST00000447124 RAI1Q7Z5J4 1906 aaPredicted RBP18.41■□□□□ 0.54
SDC1-205ENST00000447124 SMPD2O60906 423 aa18.41■□□□□ 0.54
SDC1-205ENST00000447124 FPR1P21462 350 aa18.41■□□□□ 0.54
SDC1-205ENST00000447124 DIO1P49895 249 aa18.41■□□□□ 0.54
SDC1-205ENST00000447124 SYT14P1Q58G82 188 aa18.41■□□□□ 0.54
SDC1-205ENST00000447124 ATG16L1Q676U5 607 aa18.41■□□□□ 0.54
SDC1-205ENST00000447124 ZNF704Q6ZNC4 412 aaPredicted RBP18.41■□□□□ 0.54
SDC1-205ENST00000447124 LRRC75A-AS1Q8N1F1 130 aa18.41■□□□□ 0.54
SDC1-205ENST00000447124 STEAP2Q8NFT2 490 aa18.41■□□□□ 0.54
SDC1-205ENST00000447124 TRNT1Q96Q11 434 aaKnown RBP18.41■□□□□ 0.54
SDC1-205ENST00000447124 KLHL9Q9P2J3 617 aa18.41■□□□□ 0.54
SDC1-205ENST00000447124 PRSS50Q9UI38 385 aa18.41■□□□□ 0.54
SDC1-205ENST00000447124 AGAP5A6NIR3 686 aa18.4■□□□□ 0.54
SDC1-205ENST00000447124 APOBEC1P41238 236 aaKnown RBP18.4■□□□□ 0.54
SDC1-205ENST00000447124 MVDP53602 400 aa18.4■□□□□ 0.54
SDC1-205ENST00000447124 PDCD4Q53EL6 469 aaKnown RBP18.4■□□□□ 0.54
SDC1-205ENST00000447124 NXNQ6DKJ4 435 aa18.4■□□□□ 0.54
SDC1-205ENST00000447124 ALKBH2Q6NS38 261 aa18.4■□□□□ 0.54
SDC1-205ENST00000447124 C20orf204Q6ZNR8 217 aa18.4■□□□□ 0.54
SDC1-205ENST00000447124 LRRC74BQ6ZQY2 392 aa18.4■□□□□ 0.54
SDC1-205ENST00000447124 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.4■□□□□ 0.54
SDC1-205ENST00000447124 ZNF563Q8TA94 476 aa18.4■□□□□ 0.54
SDC1-205ENST00000447124 RAB3IL1Q8TBN0 382 aa18.4■□□□□ 0.54
SDC1-205ENST00000447124 PNPT1Q8TCS8 783 aaKnown RBP18.4■□□□□ 0.54
SDC1-205ENST00000447124 DNAJA3Q96EY1 480 aa18.4■□□□□ 0.54
SDC1-205ENST00000447124 ARL5BQ96KC2 179 aa18.4■□□□□ 0.54
SDC1-205ENST00000447124 OR52B2Q96RD2 323 aa18.4■□□□□ 0.54
SDC1-205ENST00000447124 CCL19Q99731 98 aa18.4■□□□□ 0.54
SDC1-205ENST00000447124 EXOSC3Q9NQT5 275 aaKnown RBP18.4■□□□□ 0.54
SDC1-205ENST00000447124 LIPT1Q9Y234 373 aa18.4■□□□□ 0.54
SDC1-205ENST00000447124 ZNF724A8MTY0 619 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 SLCO1B7G3V0H7 640 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 SULT2B1O00204 365 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 AP3D1O14617 1153 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 SLC22A3O75751 556 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 FESP07332 822 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 TFPIP10646 304 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 HOXB4P17483 251 aaPredicted RBP18.39■□□□□ 0.53
SDC1-205ENST00000447124 OR3A2P47893 321 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 IDH2P48735 452 aaKnown RBP18.39■□□□□ 0.53
SDC1-205ENST00000447124 TAB1Q15750 504 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 GRINAQ7Z429 371 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 MTDHQ86UE4 582 aaKnown RBP18.39■□□□□ 0.53
SDC1-205ENST00000447124 P3H2Q8IVL5 708 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 ARFGAP2Q8N6H7 521 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 TRIML2Q8N7C3 387 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 GLB1L3Q8NCI6 653 aaPredicted RBP18.39■□□□□ 0.53
SDC1-205ENST00000447124 LILRB1Q8NHL6 650 aaPredicted RBP18.39■□□□□ 0.53
SDC1-205ENST00000447124 POM121Q96HA1 1249 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 ZBTB18Q99592 522 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 TACO1Q9BSH4 297 aaKnown RBP18.39■□□□□ 0.53
SDC1-205ENST00000447124 OR11A1Q9GZK7 315 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 MTHFD2LQ9H903 347 aaPredicted RBP18.39■□□□□ 0.53
SDC1-205ENST00000447124 NKIRAS1Q9NYS0 192 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 CHRNA9Q9UGM1 479 aa18.39■□□□□ 0.53
SDC1-205ENST00000447124 IL6P05231 212 aa18.38■□□□□ 0.53
SDC1-205ENST00000447124 CCNA2P20248 432 aa18.38■□□□□ 0.53
SDC1-205ENST00000447124 RPS4Y1P22090 263 aaKnown RBP18.38■□□□□ 0.53
SDC1-205ENST00000447124 NTF4P34130 210 aa18.38■□□□□ 0.53
SDC1-205ENST00000447124 ITGADQ13349 1161 aa18.38■□□□□ 0.53
SDC1-205ENST00000447124 P2RY6Q15077 328 aa18.38■□□□□ 0.53
SDC1-205ENST00000447124 GTDC1Q4AE62 458 aa18.38■□□□□ 0.53
SDC1-205ENST00000447124 Q5PR19 223 aa18.38■□□□□ 0.53
SDC1-205ENST00000447124 SEZ6L2Q6UXD5 910 aa18.38■□□□□ 0.53
SDC1-205ENST00000447124 ATG4DQ86TL0 474 aaPredicted RBP18.38■□□□□ 0.53
SDC1-205ENST00000447124 SLC25A43Q8WUT9 341 aaPredicted RBP18.38■□□□□ 0.53
SDC1-205ENST00000447124 C18orf12Q96KH6 178 aa18.38■□□□□ 0.53
SDC1-205ENST00000447124 SDR39U1Q9NRG7 319 aaPredicted RBP18.38■□□□□ 0.53
SDC1-205ENST00000447124 RFXANKO14593 260 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 ARHGEF9O43307 516 aa18.37■□□□□ 0.53
SDC1-205ENST00000447124 RAMP1O60894 148 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms