RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ANKRD42Q8N9B4 389 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 GLB1L3Q8NCI6 653 aaPredicted RBP17■□□□□ 0.31
CCDC28A-203ENST00000617445 SLC25A43Q8WUT9 341 aaPredicted RBP17■□□□□ 0.31
CCDC28A-203ENST00000617445 ROPN1LQ96C74 230 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 SLC35A5Q9BS91 424 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 SRXN1Q9BYN0 137 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 COQ10BQ9H8M1 238 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 DLL4Q9NR61 685 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 ACER3Q9NUN7 267 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 AIG1Q9NVV5 245 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 KLHL9Q9P2J3 617 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 MARCOQ9UEW3 520 aaPredicted RBP17■□□□□ 0.31
CCDC28A-203ENST00000617445 KCNE5Q9UJ90 142 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 LIPT1Q9Y234 373 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 ZNF469Q96JG9 3925 aaPredicted RBP17■□□□□ 0.31
CCDC28A-203ENST00000617445 PRR14LQ5THK1 2151 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 NIPBLQ6KC79 2804 aaeCLIP16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 TMEM120BA0PK00 339 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 SDHDO14521 159 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 SNNO75324 88 aaPredicted RBP16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 CYP7B1O75881 506 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 MAGEA8P43361 318 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 WDR4P57081 412 aaKnown RBP16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 SESN3P58005 492 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 NKX6-1P78426 367 aaPredicted RBP16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 HPCAP84074 193 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 TYW3Q6IPR3 259 aaKnown RBP16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 TNFAIP8L2Q6P589 184 aaPredicted RBP16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 C22orf34Q6ZV56 151 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 TUSC5Q8IXB3 177 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 ZNF619Q8N2I2 560 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 FAM71CQ8NEG0 241 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 ATP6V1C2Q8NEY4 427 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 PMM1Q92871 262 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 ZBTB18Q99592 522 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 ACTR6Q9GZN1 396 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 C12orf49Q9H741 205 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 BCO1Q9HAY6 547 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 SPIN1Q9Y657 262 aaPredicted RBP16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 NAV3Q8IVL0 2385 aa16.99■□□□□ 0.31
CCDC28A-203ENST00000617445 CCDC154A6NI56 674 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 KLF4O43474 513 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 SMPD2O60906 423 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 ERLIN1O75477 346 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 PGRP06401 933 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 THBDP07204 575 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 ALDOCP09972 364 aaKnown RBP16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 UBTFL6P0CB48 400 aaPredicted RBP16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 ENPP1P22413 925 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 LOXP28300 417 aaPredicted RBP16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 PGM1P36871 562 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 APOBEC1P41238 236 aaKnown RBP16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 UFM1P61960 85 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 CSNK2A1P68400 391 aaPredicted RBP16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 P2RY6Q15077 328 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 TFAP2EQ6VUC0 442 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 CMIPQ8IY22 773 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 RAB8BQ92930 207 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 TRNT1Q96Q11 434 aaKnown RBP16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 PANX1Q96RD7 426 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 UBTD1Q9HAC8 227 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 EXOSC3Q9NQT5 275 aaKnown RBP16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 NKIRAS1Q9NYS0 192 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 PRDM4Q9UKN5 801 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 GPR45Q9Y5Y3 372 aa16.98■□□□□ 0.31
CCDC28A-203ENST00000617445 TMCC2O75069 709 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 IDO1P14902 403 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 CASP9P55211 416 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 KCNJ10P78508 379 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 MERTKQ12866 999 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 MAPK14Q16539 360 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 GPAT3Q53EU6 434 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 PRSS57Q6UWY2 283 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 FRRS1Q6ZNA5 592 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 PLEKHM3Q6ZWE6 761 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 P3H2Q8IVL5 708 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 GABRG1Q8N1C3 465 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 WFDC11Q8NEX6 87 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 ZNF524Q96C55 264 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 TEX37Q96LM6 180 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 OR5B2Q96R09 309 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 OR52E6Q96RD3 313 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 CCL19Q99731 98 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 NGBQ9NPG2 151 aa16.97■□□□□ 0.31
CCDC28A-203ENST00000617445 RAI1Q7Z5J4 1906 aaPredicted RBP16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 CENPVL1A0A0U1RR11 272 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 A0A1W2PNR3 127 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 ZNF724A8MTY0 619 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 HMGN4O00479 90 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 CYTIPO60759 359 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 GCM2O75603 506 aaPredicted RBP16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 IL6P05231 212 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 EPHA3P29320 983 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 CLK1P49759 484 aaKnown RBP16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 RASGEF1BQ0VAM2 473 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 GNA13Q14344 377 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 SYT14P1Q58G82 188 aa16.96■□□□□ 0.31
CCDC28A-203ENST00000617445 SFRP5Q5T4F7 317 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms