RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 HEATR1Q9H583 2144 aaKnown RBP17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 LRP5LA4QPB2 252 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 ATP6V1G2-DDX39BF2Z307 99 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 NDUFS8O00217 210 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 SEC22BO75396 215 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 ATP6V1C1P21283 382 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 SRP14P37108 136 aaKnown RBP17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 CCR4P51679 360 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 SUMO3P55854 103 aaPredicted RBP17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 LASP1Q14847 261 aaKnown RBP17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 QPRTQ15274 297 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 TIGD2Q4W5G0 525 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 EXOSC6Q5RKV6 272 aaKnown RBP17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 CDC73Q6P1J9 531 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 TRIM46Q7Z4K8 759 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 TMCO5AQ8N6Q1 288 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 CCNYL1Q8N7R7 359 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 WDR31Q8NA23 367 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 APH1AQ96BI3 265 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 PPCDCQ96CD2 204 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 L3HYPDHQ96EM0 354 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 FUT8Q9BYC5 575 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 CDC42EP4Q9H3Q1 356 aaKnown RBP17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 FKRPQ9H9S5 495 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 ASB6Q9NWX5 421 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 NOSIPQ9Y314 301 aaKnown RBP17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 FKBP7Q9Y680 259 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 MEGF8Q7Z7M0 2845 aa17.8■□□□□ 0.44
SQSTM1-215ENST00000514093 H3BNH8 94 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 RSL1D1O76021 490 aaKnown RBP17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 ZNF23P17027 643 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 DIO1P49895 249 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 PHC1P78364 1004 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 MLC1Q15049 377 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 KIAA0040Q15053 153 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 SWI5Q1ZZU3 235 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 SLC25A53Q5H9E4 307 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 ZCCHC12Q6PEW1 402 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 ZNF527Q8NB42 609 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 OR52E4Q8NGH9 312 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 CLHC1Q8NHS4 586 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 MUS81Q96NY9 551 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 VRK1Q99986 396 aaPredicted RBP17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 BPESC1Q9GZL8 116 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 IQCGQ9H095 443 aaKnown RBP17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 TNFRSF12AQ9NP84 129 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 ZCCHC3Q9NUD5 404 aaKnown RBP17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 TAS2R16Q9NYV7 291 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 PTGDR2Q9Y5Y4 395 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 KCNE3Q9Y6H6 103 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.79■□□□□ 0.443e-8■■■□□ 15.5
SQSTM1-215ENST00000514093 ARFGEF3Q5TH69 2177 aa17.79■□□□□ 0.44
SQSTM1-215ENST00000514093 DYSFO75923 2080 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 LOC390937A0A1W2PQ73 354 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 HSPA4LO95757 839 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 HMGN2P05204 90 aaKnown RBP17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 ITGA5P08648 1049 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 SLC25A3Q00325 362 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 C3orf33Q6P1S2 294 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 TMPPEQ6ZT21 453 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 SLC22A9Q8IVM8 553 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 OR5W2Q8NH69 310 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 FAM120BQ96EK7 910 aaKnown RBP17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 TSSK3Q96PN8 268 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 HOXD1Q9GZZ0 328 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 PIGUQ9H490 435 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 REEP4Q9H6H4 257 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 RRAGDQ9NQL2 400 aaPredicted RBP17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 EMC3Q9P0I2 261 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 BAIAP2L1Q9UHR4 511 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 CCL27Q9Y4X3 112 aa17.78■□□□□ 0.44
SQSTM1-215ENST00000514093 ZNF716A6NP11 495 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 ESPNB1AK53 854 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 NPIPB8E9PQR5 432 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 SULT2B1O00204 365 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 CRCPO75575 148 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 CYP7B1O75881 506 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 SNRPAP09012 282 aaKnown RBP17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 IL2RGP31785 369 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 FRKP42685 505 aaPredicted RBP17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 FAM174BQ3ZCQ3 159 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 OR7E24Q6IFN5 339 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 LSRQ86X29 649 aaPredicted RBP17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 TOR1AIP2Q8NFQ8 470 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 STACQ99469 402 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 THUMPD3Q9BV44 507 aaKnown RBP17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 DUSP22Q9NRW4 184 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 SIRT3Q9NTG7 399 aaPredicted RBP17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 TMEFF2Q9UIK5 374 aaPredicted RBP17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 ZNF180Q9UJW8 692 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 MOKQ9UQ07 419 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 DTNAQ9Y4J8 743 aa17.77■□□□□ 0.44
SQSTM1-215ENST00000514093 IGKV3D-15A0A087WSY6 115 aa17.76■□□□□ 0.43
SQSTM1-215ENST00000514093 ZNF264O43296 627 aa17.76■□□□□ 0.43
SQSTM1-215ENST00000514093 SLU7O95391 586 aaKnown RBP17.76■□□□□ 0.43
SQSTM1-215ENST00000514093 EGR1P18146 543 aa17.76■□□□□ 0.43
SQSTM1-215ENST00000514093 ATP12AP54707 1039 aa17.76■□□□□ 0.43
SQSTM1-215ENST00000514093 CBFBQ13951 182 aa17.76■□□□□ 0.43
SQSTM1-215ENST00000514093 DCST2Q5T1A1 773 aa17.76■□□□□ 0.43
SQSTM1-215ENST00000514093 ABLIM2Q6H8Q1 611 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms