RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 CHST2Q9Y4C5 530 aa9.43□□□□□ -0.9
HDAC3-214ENST00000495485 COMMD3-BMI1R4GMX3 469 aa9.43□□□□□ -0.9
HDAC3-214ENST00000495485 PRRC2CQ9Y520 2896 aaKnown RBP9.42□□□□□ -0.9
HDAC3-214ENST00000495485 RP1L1Q8IWN7 2480 aaPredicted RBP9.42□□□□□ -0.9
HDAC3-214ENST00000495485 NPIPA5A0A0B4J1W7 369 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 A0A0B4J2E0 115 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 A0A1B0GX12 115 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 OR2W5A6NFC9 320 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 UNC119BA6NIH7 251 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 NPIPA7E9PJI5 369 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 ZNF264O43296 627 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 TLX3O43711 291 aaPredicted RBP9.42□□□□□ -0.9
HDAC3-214ENST00000495485 HCN1O60741 890 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 CNOT3O75175 753 aaKnown RBP9.42□□□□□ -0.9
HDAC3-214ENST00000495485 TRMUO75648 421 aaKnown RBP9.42□□□□□ -0.9
HDAC3-214ENST00000495485 ZFAND5O76080 213 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 IGKV1D-16P01601 117 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 GKN3PP0CG01 181 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 NPIPA8P0DM63 369 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 OMPP47874 163 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 SLC35A2P78381 396 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 CDK5Q00535 292 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 CLN3Q13286 438 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 GINS1Q14691 196 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 NEDD8Q15843 81 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 KLHL22Q53GT1 634 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 ALG10BQ5I7T1 473 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 FAAH2Q6GMR7 532 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 B3GNT6Q6ZMB0 384 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 TMPRSS11FQ6ZWK6 438 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 COMTD1Q86VU5 262 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 NKAIN4Q8IVV8 208 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 FAM26EQ8N5C1 309 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 SLC15A4Q8N697 577 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 PHOSPHO1Q8TCT1 267 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 CNOT9Q92600 299 aaKnown RBP9.42□□□□□ -0.9
HDAC3-214ENST00000495485 MR1Q95460 341 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 RFKQ969G6 155 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 EFHD2Q96C19 240 aaPredicted RBP9.42□□□□□ -0.9
HDAC3-214ENST00000495485 BCL7BQ9BQE9 202 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 RSPO3Q9BXY4 272 aaPredicted RBP9.42□□□□□ -0.9
HDAC3-214ENST00000495485 LAT2Q9GZY6 243 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 RACGAP1Q9H0H5 632 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 CXorf56Q9H5V9 222 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 C12orf10Q9HB07 376 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 IL20Q9NYY1 176 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 KCNE5Q9UJ90 142 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 PPIEQ9UNP9 301 aaKnown RBP9.42□□□□□ -0.9
HDAC3-214ENST00000495485 PCDHGB6Q9Y5F9 930 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 ATMQ13315 3056 aa9.42□□□□□ -0.9
HDAC3-214ENST00000495485 A0A1B0GWA3 101 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 OR6C70A6NIJ9 312 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 CLDN24A6NM45 220 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 ZNF891A8MT65 544 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-214ENST00000495485 ZNF99A8MXY4 864 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-214ENST00000495485 KLK10O43240 276 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 NDUFB5O43674 189 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 WBP4O75554 376 aaKnown RBP9.41□□□□□ -0.9
HDAC3-214ENST00000495485 OR6B1O95007 311 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 IGF2P01344 180 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 SAGP10523 405 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-214ENST00000495485 PIPP12273 146 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-214ENST00000495485 IFI30P13284 250 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 PGCP20142 388 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 EPHA2P29317 976 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 ACAA2P42765 397 aaKnown RBP9.41□□□□□ -0.9
HDAC3-214ENST00000495485 SLC9A3P48764 834 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 PCYT1AP49585 367 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 ST13P50502 369 aaKnown RBP9.41□□□□□ -0.9
HDAC3-214ENST00000495485 TMBIM6P55061 237 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 CTBP2P56545 445 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 RNF4P78317 190 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 HOXC5Q00444 222 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 TLE3Q04726 772 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.41□□□□□ -0.9
HDAC3-214ENST00000495485 NCF4Q15080 339 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 EXT1Q16394 746 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 NNATQ16517 81 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 SNAPC1Q16533 368 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 ANKDD1AQ495B1 522 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 TMEM201Q5SNT2 666 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 ZNF385CQ66K41 422 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-214ENST00000495485 MRPL14Q6P1L8 145 aaKnown RBP9.41□□□□□ -0.9
HDAC3-214ENST00000495485 PAPD4Q6PIY7 484 aaKnown RBP9.41□□□□□ -0.9
HDAC3-214ENST00000495485 TMEM205Q6UW68 189 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 LAPTM4BQ86VI4 370 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 SPACA3Q8IXA5 215 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 NRMQ8IXM6 262 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 C9orf40Q8IXQ3 194 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 CADM2Q8N3J6 435 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 TMCO5AQ8N6Q1 288 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 GALNT6Q8NCL4 622 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 OR2T33Q8NG76 320 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 OR4C3Q8NH37 302 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 SLC22A8Q8TCC7 542 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 BRIX1Q8TDN6 353 aaKnown RBP9.41□□□□□ -0.9
HDAC3-214ENST00000495485 TMEM255BQ8WV15 326 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 BPIFA2Q96DR5 249 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 OMA1Q96E52 524 aa9.41□□□□□ -0.9
HDAC3-214ENST00000495485 FAM46AQ96IP4 442 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms