RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 FBXO27Q8NI29 283 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 PHOSPHO1Q8TCT1 267 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 ZFAND2BQ8WV99 257 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 OTUB1Q96FW1 271 aaPredicted RBP4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 MRGPRX4Q96LA9 322 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 MS4A4EQ96PG1 132 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 SORCS2Q96PQ0 1159 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 ZNF300Q96RE9 604 aaPredicted RBP4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 KCNA7Q96RP8 456 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 NAPGQ99747 312 aaPredicted RBP4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 PIMREGQ9BSJ6 248 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 INPP5KQ9BT40 448 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 SOX7Q9BT81 388 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 ACSS3Q9H6R3 686 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 ICAM5Q9UMF0 924 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 WBP11Q9Y2W2 641 aaKnown RBP4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 TRAF6Q9Y4K3 522 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 POLR3HQ9Y535 204 aaPredicted RBP4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 TIMM22Q9Y584 194 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 ACTL7BQ9Y614 415 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 DYSFO75923 2080 aa4.5□□□□□ -1.69
SNRNP40-204ENST00000474025 IGKV3D-15A0A087WSY6 115 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 NPIPA5A0A0B4J1W7 369 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 LOC390937A0A1W2PQ73 354 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 A0A1W2PR80 420 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 NPIPA7E9PJI5 369 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 NPIPB8E9PQR5 432 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 M0R1B8 84 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 PDPK1O15530 556 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 H6PDO95479 791 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 NUDT14O95848 222 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 TGFAP01135 160 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 IGHV3-9P01782 118 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 ENO1P06733 434 aaKnown RBP4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 INHBAP08476 426 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 ITGA5P08648 1049 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 NPIPA8P0DM63 369 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 ZNF23P17027 643 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 APOBEC3AP31941 199 aaPredicted RBP4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 FRKP42685 505 aaPredicted RBP4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 P2RX1P51575 399 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 PRKAG1P54619 331 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 FOXG1P55316 489 aaPredicted RBP4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 FOXA1P55317 472 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 PKNOX1P55347 436 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 GNG11P61952 73 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 POU6F2P78424 691 aaPredicted RBP4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 SLC25A3Q00325 362 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 CHRNB3Q05901 458 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 C2orf54Q08AI8 447 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 SCGB2A2Q13296 93 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 PDCD2Q16342 344 aaPredicted RBP4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 GABRA6Q16445 453 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 MST1LQ2TV78 715 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 NDUFAF6Q330K2 333 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 FAM174BQ3ZCQ3 159 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 KLHL26Q53HC5 615 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 ZNF385BQ569K4 471 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 SLC25A53Q5H9E4 307 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 SPDYAQ5MJ70 313 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 CCNJQ5T5M9 372 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 FBXW9Q5XUX1 488 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 ABLIM2Q6H8Q1 611 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 ANKRD26P1Q6NSI1 321 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 NOXRED1Q6NXP6 359 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 C3orf33Q6P1S2 294 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 IKBIPQ70UQ0 350 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 SZRD1Q7Z422 152 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 MTERF4Q7Z6M4 381 aaKnown RBP4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 ZNF100Q8IYN0 542 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 COX18Q8N8Q8 333 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 ATP6V1C2Q8NEY4 427 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 NUP43Q8NFH3 380 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 SEMA6DQ8NFY4 1073 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 CEP70Q8NHQ1 597 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 FAM76AQ8TAV0 307 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 GPR119Q8TDV5 335 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 CIDECQ96AQ7 238 aaPredicted RBP4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 C3orf49Q96BT1 292 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 C16orf58Q96GQ5 468 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 ZNF764Q96H86 408 aaPredicted RBP4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 EGLN2Q96KS0 407 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 FOXN4Q96NZ1 517 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 PAFAH2Q99487 392 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 TRMOQ9BU70 441 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 BTBD2Q9BX70 525 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 FUT8Q9BYC5 575 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 BPESC1Q9GZL8 116 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 C12orf65Q9H3J6 166 aaKnown RBP4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 KCNF1Q9H3M0 494 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 FKRPQ9H9S5 495 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 DUSP22Q9NRW4 184 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 ZDHHC18Q9NUE0 388 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 TAS2R16Q9NYV7 291 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 NINJ2Q9NZG7 142 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 MALT1Q9UDY8 824 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 CARD8Q9Y2G2 431 aa4.49□□□□□ -1.69
SNRNP40-204ENST00000474025 UTP11Q9Y3A2 253 aaKnown RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms