RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 A1L4Q6 167 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 GMNCA6NCL1 334 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 SLC22A20A6NK97 555 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 PRSS44E7EML9 344 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 FBP2O00757 339 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 MRASO14807 208 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 ADAMDEC1O15204 470 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 SNX3O60493 162 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 RCBTB2O95199 551 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 DRD4P21917 467 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 SLC6A2P23975 617 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 CALRP27797 417 aaKnown RBP10.68□□□□□ -0.7
VPS52-213ENST00000461743 HTR1EP28566 365 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 PRKAR1BP31321 381 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 OPRM1P35372 400 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 STARP49675 285 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 MAP2K6P52564 334 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 CDK6Q00534 326 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 PLAURQ03405 335 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 SRYQ05066 204 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 CYP51A1Q16850 503 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 NDUFAF6Q330K2 333 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 REP15Q6BDI9 236 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 ZNF836Q6ZNA1 936 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 GRINAQ7Z429 371 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 CPLX4Q7Z7G2 160 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 SNX32Q86XE0 403 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 C11orf65Q8NCR3 313 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 HIPK4Q8NE63 616 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 OR52P1PQ8NH57 321 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 FBXO27Q8NI29 283 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 RP9Q8TA86 221 aaKnown RBP10.68□□□□□ -0.7
VPS52-213ENST00000461743 KLHL15Q96M94 604 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 THUMPD3Q9BV44 507 aaKnown RBP10.68□□□□□ -0.7
VPS52-213ENST00000461743 IKZF5Q9H5V7 419 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 GID8Q9NWU2 228 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 ZNF232Q9UNY5 417 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 AP3M1Q9Y2T2 418 aa10.68□□□□□ -0.7
VPS52-213ENST00000461743 ITPR2Q14571 2701 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 DCHS2Q6V1P9 2916 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 PRORSD1PA6NEY8 169 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 CFAP73A6NFT4 308 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 FXYD1O00168 92 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 EIF1AYO14602 144 aaKnown RBP10.67□□□□□ -0.7
VPS52-213ENST00000461743 SEC14L5O43304 696 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 CYP7B1O75881 506 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 TOXO94900 526 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 PGM3O95394 542 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 NUDT7P0C024 238 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 PABPC4LP0CB38 370 aaKnown RBP10.67□□□□□ -0.7
VPS52-213ENST00000461743 CD1EP15812 388 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 CTSSP25774 331 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 PEX19P40855 299 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 APOBEC1P41238 236 aaKnown RBP10.67□□□□□ -0.7
VPS52-213ENST00000461743 RNF144AP50876 292 aaPredicted RBP10.67□□□□□ -0.7
VPS52-213ENST00000461743 CLDN15P56746 228 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 CLDN20P56880 219 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 MTPNP58546 118 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 EPS8Q12929 822 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 SCARB2Q14108 478 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 CTU2Q2VPK5 515 aaKnown RBP10.67□□□□□ -0.7
VPS52-213ENST00000461743 RPS26P11Q5JNZ5 115 aaPredicted RBP10.67□□□□□ -0.7
VPS52-213ENST00000461743 ZNF550Q7Z398 422 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 P4HA3Q7Z4N8 544 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 ARPINQ7Z6K5 226 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 UBQLNLQ8IYU4 475 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 C9orf106Q8NAJ2 232 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 TNIP2Q8NFZ5 429 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 OR5M1Q8NGP8 315 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 OR2V1Q8NHB1 315 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 NFKBIDQ8NI38 313 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 ZNF563Q8TA94 476 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 SMPDL3BQ92485 455 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 MAL2Q969L2 176 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 LRRC58Q96CX6 371 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 ZG16BQ96DA0 208 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 LRRC46Q96FV0 321 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 ZNF607Q96SK3 696 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 KAT8Q9H7Z6 458 aaKnown RBP10.67□□□□□ -0.7
VPS52-213ENST00000461743 SLC24A3Q9HC58 644 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 KCNJ16Q9NPI9 418 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 TIGARQ9NQ88 270 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 SERINC1Q9NRX5 453 aa10.67□□□□□ -0.7
VPS52-213ENST00000461743 FOXD3Q9UJU5 478 aaPredicted RBP10.67□□□□□ -0.7
VPS52-213ENST00000461743 MCTS1Q9ULC4 181 aaKnown RBP10.67□□□□□ -0.7
VPS52-213ENST00000461743 SHISA8B8ZZ34 492 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 SERPINB7O75635 380 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 TMIGD3P0DMS9 266 aaPredicted RBP10.66□□□□□ -0.7
VPS52-213ENST00000461743 PRDX6P30041 224 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 PCGF2P35227 344 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 EIF1AXP47813 144 aaKnown RBP10.66□□□□□ -0.7
VPS52-213ENST00000461743 CLK1P49759 484 aaKnown RBP10.66□□□□□ -0.7
VPS52-213ENST00000461743 ASCL1P50553 236 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 ZNF136P52737 540 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 SUCLG1P53597 346 aaKnown RBP10.66□□□□□ -0.7
VPS52-213ENST00000461743 SEC24CP53992 1094 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 PCBP3P57721 371 aaKnown RBP10.66□□□□□ -0.7
VPS52-213ENST00000461743 SESN3P58005 492 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 TFF3Q07654 80 aa10.66□□□□□ -0.7
VPS52-213ENST00000461743 TOMM34Q15785 309 aaPredicted RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms