RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 GCNT2Q8N0V5 402 aa17.26■□□□□ 0.35
SYNE4-202ENST00000340477 ATP6V1C2Q8NEY4 427 aa17.26■□□□□ 0.35
SYNE4-202ENST00000340477 C10orf82Q8WW14 230 aa17.26■□□□□ 0.35
SYNE4-202ENST00000340477 MARVELD3Q96A59 401 aa17.26■□□□□ 0.35
SYNE4-202ENST00000340477 ANKRD27Q96NW4 1050 aa17.26■□□□□ 0.35
SYNE4-202ENST00000340477 KLHDC3Q9BQ90 382 aa17.26■□□□□ 0.35
SYNE4-202ENST00000340477 CPPED1Q9BRF8 314 aaPredicted RBP17.26■□□□□ 0.35
SYNE4-202ENST00000340477 SPATA5L1Q9BVQ7 753 aa17.26■□□□□ 0.35
SYNE4-202ENST00000340477 SLC24A3Q9HC58 644 aa17.26■□□□□ 0.35
SYNE4-202ENST00000340477 BCL2L10Q9HD36 194 aa17.26■□□□□ 0.35
SYNE4-202ENST00000340477 ACER3Q9NUN7 267 aa17.26■□□□□ 0.35
SYNE4-202ENST00000340477 DNAJB12Q9NXW2 375 aaKnown RBP17.26■□□□□ 0.35
SYNE4-202ENST00000340477 ANGPT4Q9Y264 503 aa17.26■□□□□ 0.35
SYNE4-202ENST00000340477 INTS1Q8N201 2190 aaKnown RBP17.25■□□□□ 0.35
SYNE4-202ENST00000340477 HCFC1P51610 2035 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 CFAP73A6NFT4 308 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 CLDN24A6NM45 220 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 ETV2O00321 342 aaPredicted RBP17.25■□□□□ 0.35
SYNE4-202ENST00000340477 DNAJA2O60884 412 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 TGM6O95932 706 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 PLGP00747 810 aaPredicted RBP17.25■□□□□ 0.35
SYNE4-202ENST00000340477 OPN1LWP04000 364 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 NUDT7P0C024 238 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 PABPC4LP0CB38 370 aaKnown RBP17.25■□□□□ 0.35
SYNE4-202ENST00000340477 GPX2P18283 190 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 PEX19P40855 299 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 HTR3AP46098 478 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 SESN3P58005 492 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 MAPK11Q15759 364 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 RUNDC3AQ59EK9 446 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 ZNF311Q5JNZ3 666 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 RNF220Q5VTB9 566 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 POMZP3Q6PJE2 187 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 MEX3BQ6ZN04 569 aaKnown RBP17.25■□□□□ 0.35
SYNE4-202ENST00000340477 ZNF836Q6ZNA1 936 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 GRINAQ7Z429 371 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 MED12LQ86YW9 2145 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 LIX1LQ8IVB5 337 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 MCEMP1Q8IX19 187 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 PCYOX1LQ8NBM8 494 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 NFKBIDQ8NI38 313 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 FNDC9Q8TBE3 224 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 SLC25A43Q8WUT9 341 aaPredicted RBP17.25■□□□□ 0.35
SYNE4-202ENST00000340477 CNOT9Q92600 299 aaKnown RBP17.25■□□□□ 0.35
SYNE4-202ENST00000340477 ZNF845Q96IR2 970 aaPredicted RBP17.25■□□□□ 0.35
SYNE4-202ENST00000340477 ZNF607Q96SK3 696 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 NPAS1Q99742 590 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 SH3GL1Q99961 368 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 SPOCK3Q9BQ16 436 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 FAM107BQ9H098 131 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 PIGMQ9H3S5 423 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 TMEM38AQ9H6F2 299 aa17.25■□□□□ 0.35
SYNE4-202ENST00000340477 FOXD3Q9UJU5 478 aaPredicted RBP17.25■□□□□ 0.35
SYNE4-202ENST00000340477 CDHR4A6H8M9 788 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 C19orf84I3L1E1 186 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 MRASO14807 208 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 ADAMDEC1O15204 470 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 CXCL13O43927 109 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 NTN1O95631 604 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 ETS2P15036 469 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 APOBEC1P41238 236 aaKnown RBP17.24■□□□□ 0.35
SYNE4-202ENST00000340477 CPA2P48052 419 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 CARD18P57730 90 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 COPZ1P61923 177 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 SCARB2Q14108 478 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 TMEM176BQ3YBM2 270 aaPredicted RBP17.24■□□□□ 0.35
SYNE4-202ENST00000340477 PLXDC2Q6UX71 529 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 PLEKHM3Q6ZWE6 761 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 ZNF550Q7Z398 422 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 CPLX4Q7Z7G2 160 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 RETREG3Q86VR2 466 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 SNX32Q86XE0 403 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 VRK2Q86Y07 508 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 CNEP1R1Q8N9A8 125 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 RELL2Q8NC24 303 aaPredicted RBP17.24■□□□□ 0.35
SYNE4-202ENST00000340477 C11orf65Q8NCR3 313 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 FIG4Q92562 907 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 CPNE4Q96A23 557 aaPredicted RBP17.24■□□□□ 0.35
SYNE4-202ENST00000340477 ADGRG7Q96K78 797 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 SPATA9Q9BWV2 254 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 SLC13A4Q9UKG4 626 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 PRDM4Q9UKN5 801 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 PACSIN3Q9UKS6 424 aa17.24■□□□□ 0.35
SYNE4-202ENST00000340477 A0A0J9YW62 118 aa17.23■□□□□ 0.35
SYNE4-202ENST00000340477 FAAHO00519 579 aa17.23■□□□□ 0.35
SYNE4-202ENST00000340477 BCAS1O75363 584 aaPredicted RBP17.23■□□□□ 0.35
SYNE4-202ENST00000340477 PGM3O95394 542 aa17.23■□□□□ 0.35
SYNE4-202ENST00000340477 NPPAP01160 153 aa17.23■□□□□ 0.35
SYNE4-202ENST00000340477 CD1EP15812 388 aa17.23■□□□□ 0.35
SYNE4-202ENST00000340477 IL11P20809 199 aa17.23■□□□□ 0.35
SYNE4-202ENST00000340477 FKBP2P26885 142 aaKnown RBP17.23■□□□□ 0.35
SYNE4-202ENST00000340477 UQCRC1P31930 480 aa17.23■□□□□ 0.35
SYNE4-202ENST00000340477 LSP1P33241 339 aa17.23■□□□□ 0.35
SYNE4-202ENST00000340477 IDH2P48735 452 aaKnown RBP17.23■□□□□ 0.35
SYNE4-202ENST00000340477 AGFG1P52594 562 aaKnown RBP17.23■□□□□ 0.35
SYNE4-202ENST00000340477 MTPNP58546 118 aa17.23■□□□□ 0.35
SYNE4-202ENST00000340477 TFF3Q07654 80 aa17.23■□□□□ 0.35
SYNE4-202ENST00000340477 RBBP4Q09028 425 aa17.23■□□□□ 0.35
SYNE4-202ENST00000340477 CTU2Q2VPK5 515 aaKnown RBP17.23■□□□□ 0.35
SYNE4-202ENST00000340477 REP15Q6BDI9 236 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms