RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 LRRN3Q9H3W5 708 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 TRPV5Q9NQA5 729 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 TMEM5Q9Y2B1 443 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 CCDC182A6NF36 153 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 RIIAD1A6NNX1 92 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 FOXS1O43638 330 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 HCCSP53701 268 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 NPSR1Q6W5P4 371 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 RAB43Q86YS6 212 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 GHDCQ8N2G8 530 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 CLCA3PQ9Y6N3 262 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 HCN1O60741 890 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 PPP3R1P63098 170 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 E2F1Q01094 437 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 GDPD1Q8N9F7 314 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 DTX3Q8N9I9 347 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 GALNT6Q8NCL4 622 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 OR51L1Q8NGJ5 315 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 OR5W2Q8NH69 310 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 TP53INP1Q96A56 240 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 SMAD5Q99717 465 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 HOXD1Q9GZZ0 328 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 LRIT1Q9P2V4 623 aa16.92■□□□□ 0.3
SHKBP1-201ENST00000291842 C10orf142B7Z368 130 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 J3QLW9 94 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 MAGEB4O15481 346 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 CHRNB1P11230 501 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 RNH1P13489 461 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 ZNF19P17023 458 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 CCR5P51681 352 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 CTBP2P56545 445 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 SLC3A1Q07837 685 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 IL18Q14116 193 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 GALEQ14376 348 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 KIRREL2Q6UWL6 708 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 ARL14Q8N4G2 192 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 LRRC17Q8N6Y2 441 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 VSTM2LQ96N03 204 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 NECTIN4Q96NY8 510 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 LMF2Q9BU23 707 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 JAM3Q9BX67 310 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 MCCC2Q9HCC0 563 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 C14orf105Q9NVL8 296 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 ASB6Q9NWX5 421 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 WSB2Q9NYS7 404 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 ERVK-19Q9WJR5 959 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 SLC35A3Q9Y2D2 325 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 PLA2G10O15496 165 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 RGS9O75916 674 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 OR12D2P58182 307 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 FHL1Q13642 323 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 GXYLT1Q4G148 440 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 IDNKQ5T6J7 187 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 RPL13AP3Q6NVV1 102 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 RFLNBQ8N5W9 214 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 C4orf36Q96KX1 117 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 SLC22A4Q9H015 551 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 ADGRL4Q9HBW9 690 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 POLE3Q9NRF9 147 aa16.91■□□□□ 0.3
SHKBP1-201ENST00000291842 A0A1W2PPC4 97 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 SLC22A31A6NKX4 558 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 SLC2A2P11168 524 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 SHC1P29353 583 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 ASAH1Q13510 395 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 PRTGQ2VWP7 1150 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 ZNF544Q6NX49 715 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 SSX6Q7RTT6 188 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 GLCCI1Q86VQ1 547 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 Q8N402 240 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 C17orf47Q8NEP4 570 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 SDR9C7Q8NEX9 313 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 OR5M3Q8NGP4 307 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 OR4C3Q8NH37 302 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 OR4K13Q8NH42 304 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 SMPDL3BQ92485 455 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 MMABQ96EY8 250 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 ERMAPQ96PL5 475 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 COQ7Q99807 217 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 B3GAT2Q9NPZ5 323 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 PRTFDC1Q9NRG1 225 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 ZMIZ1Q9ULJ6 1067 aa16.9■□□□□ 0.3
SHKBP1-201ENST00000291842 MEIOCA2RUB1 952 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 SBK2P0C263 348 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 ZNF3P17036 446 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 MAOBP27338 520 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 ACVR1BP36896 505 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 IL20RBQ6UXL0 311 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 OR52E2Q8NGJ4 325 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 HOXB13Q92826 284 aaPredicted RBP16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 DGAT2Q96PD7 388 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 LMF1Q96S06 567 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 PPP1R3EQ9H7J1 279 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 TRIM36Q9NQ86 728 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 FBXL21Q9UKT6 434 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 POLHQ9Y253 713 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 GRIP1Q9Y3R0 1128 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 OR10H1Q9Y4A9 318 aa16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 TMEM184BQ9Y519 407 aaPredicted RBP16.89■□□□□ 0.3
SHKBP1-201ENST00000291842 IFNA16P05015 189 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms