RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 HLA-DRAP01903 254 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 RPN1P04843 607 aaKnown RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 VIMP08670 466 aaKnown RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 ZDHHC11BP0C7U3 371 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 GNSP15586 552 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 GAP43P17677 238 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 MUTP22033 750 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 LONP1P36776 959 aaKnown RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 KCNJ1P48048 391 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 RPS24P62847 133 aaKnown RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 NOP14P78316 857 aaKnown RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 RPP38P78345 283 aaKnown RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 ADIGQ0VDE8 80 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 ABRQ12979 859 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 ORC2Q13416 577 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 FASTKQ14296 549 aaKnown RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 PSMD6Q15008 389 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 STK38Q15208 465 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 TGIF1Q15583 401 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 KYAT1Q16773 422 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 GSG1Q2KHT4 349 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 ISXQ2M1V0 245 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 TPRG1LQ5T0D9 272 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 C1orf220Q5T0J3 134 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 ZCCHC12Q6PEW1 402 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 GLRX5Q86SX6 157 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 ERICH1Q86X53 443 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 WDR49Q8IV35 697 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 CARNMT1Q8N4J0 409 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 KIAA0895Q8NCT3 520 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 OR52K2Q8NGK3 314 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 OR2T3Q8NH03 318 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 GPR148Q8TDV2 347 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 SMARCD1Q96GM5 515 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 PIWIL1Q96J94 861 aaKnown RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 XPO6Q96QU8 1125 aaKnown RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 FERMT1Q9BQL6 677 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 EBF4Q9BQW3 602 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 ULBP1Q9BZM6 244 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 NEUROG2Q9H2A3 272 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 TCEAL2Q9H3H9 227 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 LIME1Q9H400 295 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 SUDS3Q9H7L9 328 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 PRSS16Q9NQE7 514 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 ELOVL2Q9NXB9 296 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 RPS6KB2Q9UBS0 482 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 GGA2Q9UJY4 613 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 SH3GLB1Q9Y371 365 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 TMED7Q9Y3B3 224 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 KIF3AQ9Y496 699 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 ATP8B3O60423 1300 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 TNRC6BQ9UPQ9 1833 aaKnown RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 APC2O95996 2303 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 TRAV34A0A0B4J273 112 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 A0A1B0GTQ1 180 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 YJEFN3A6XGL0 299 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 J3QKU1 62 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 K7ERQ8 282 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 LAD1O00515 517 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 RAD51BO15315 384 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 SLC31A1O15431 190 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 POLR2DO15514 142 aaKnown RBP2.3□□□□□ -2.04
SCFD1-219ENST00000556413 B4GAT1O43505 415 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 CSO75390 466 aaKnown RBP2.3□□□□□ -2.04
SCFD1-219ENST00000556413 GRAP2O75791 330 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 SIX3O95343 332 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-219ENST00000556413 LDOC1O95751 146 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-219ENST00000556413 IL1BP01584 269 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 P0C879 139 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 KRT3P12035 628 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 CD1EP15812 388 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 RDXP35241 583 aaKnown RBP2.3□□□□□ -2.04
SCFD1-219ENST00000556413 ATP5C1P36542 298 aaKnown RBP2.3□□□□□ -2.04
SCFD1-219ENST00000556413 GP5P40197 560 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 CSKP41240 450 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 SLC1A3P43003 542 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 TKTL1P51854 596 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 YWHAGP61981 247 aaKnown RBP eCLIP2.3□□□□□ -2.04
SCFD1-219ENST00000556413 RBBP4Q09028 425 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 SMARCB1Q12824 385 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 C1orf61Q13536 156 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 GPR50Q13585 617 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 CRMP1Q14194 572 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 IGFBP7Q16270 282 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 CDKN3Q16667 212 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 DEFB133Q30KQ1 61 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 ARMCX4Q5H9R4 360 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 MPP7Q5T2T1 576 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 ZNF776Q68DI1 518 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-219ENST00000556413 KCTD16Q68DU8 428 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 REP15Q6BDI9 236 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 PM20D1Q6GTS8 502 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 GUSBP11Q6P575 273 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 TAC4Q86UU9 113 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 ANKRD46Q86W74 232 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 CCDC65Q8IXS2 484 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 UXS1Q8NBZ7 420 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 OR13C5Q8NGS8 318 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 OR6K2Q8NGY2 324 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 PCNPQ8WW12 178 aaKnown RBP2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 165.1 ms