RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 PGCP20142 388 aa26.85■■□□□ 1.89
LIMCH1-211ENST00000509638 FOXK1P85037 733 aa26.85■■□□□ 1.89
LIMCH1-211ENST00000509638 HSF1Q00613 529 aa26.85■■□□□ 1.89
LIMCH1-211ENST00000509638 QPRTQ15274 297 aa26.85■■□□□ 1.89
LIMCH1-211ENST00000509638 ZNF550Q7Z398 422 aa26.85■■□□□ 1.89
LIMCH1-211ENST00000509638 ULK2Q8IYT8 1036 aa26.85■■□□□ 1.89
LIMCH1-211ENST00000509638 OR10Q1Q8NGQ4 319 aa26.85■■□□□ 1.89
LIMCH1-211ENST00000509638 SLC35B4Q969S0 331 aa26.85■■□□□ 1.89
LIMCH1-211ENST00000509638 ZNF524Q96C55 264 aa26.85■■□□□ 1.89
LIMCH1-211ENST00000509638 TPD52L3Q96J77 140 aa26.85■■□□□ 1.89
LIMCH1-211ENST00000509638 PLSCR2Q9NRY7 297 aa26.85■■□□□ 1.89
LIMCH1-211ENST00000509638 ADPRHL2Q9NX46 363 aa26.85■■□□□ 1.89
LIMCH1-211ENST00000509638 MRPS18CQ9Y3D5 142 aaKnown RBP26.85■■□□□ 1.89
LIMCH1-211ENST00000509638 TRGV5A0A0B4J1U4 118 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 TMEM229AB2RXF0 380 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 SHISA8B8ZZ34 492 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 M0R3H8 397 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 LGI1O95970 557 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 C8BP07358 591 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 RGS8P57771 180 aaPredicted RBP26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 ELOAQ14241 798 aaKnown RBP26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 TRILQ7L0X0 811 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 PROX1Q92786 737 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 RNF145Q96MT1 663 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 EXO5Q9H790 373 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 GORASP2Q9H8Y8 452 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 ZGRF1Q86YA3 2104 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 UQCRBP14927 111 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 HOXC5Q00444 222 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 FOXF1Q12946 379 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 GHDCQ8N2G8 530 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 OR5M1Q8NGP8 315 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 ZNF563Q8TA94 476 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 ZBTB8AQ96BR9 441 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 ASB9Q96DX5 294 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 NSMCE2Q96MF7 247 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 NPAS1Q99742 590 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 ARHGDIGQ99819 225 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 WFDC6Q9BQY6 131 aa26.84■■□□□ 1.89
LIMCH1-211ENST00000509638 HCN1O60741 890 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 PRKCAP17252 672 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 ATP6V1B2P21281 511 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 ACAA2P42765 397 aaKnown RBP26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 TLE1Q04724 770 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 TRIM25Q14258 630 aaKnown RBP26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 NRF1Q16656 503 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 KRTCAP3Q53RY4 240 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 PGM2L1Q6PCE3 622 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 CBLL1Q75N03 491 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 ASRGL1Q7L266 308 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 VANGL1Q8TAA9 524 aaPredicted RBP26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 NEIL3Q8TAT5 605 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 LZICQ8WZA0 190 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 SFXN2Q96NB2 322 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 MUC13Q9H3R2 512 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 ACTR3BQ9P1U1 418 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 SLC6A5Q9Y345 797 aa26.83■■□□□ 1.89
LIMCH1-211ENST00000509638 EDN3P14138 238 aa26.82■■□□□ 1.88
LIMCH1-211ENST00000509638 TNFRSF1BP20333 461 aa26.82■■□□□ 1.88
LIMCH1-211ENST00000509638 ZNF136P52737 540 aa26.82■■□□□ 1.88
LIMCH1-211ENST00000509638 SELENOWP63302 87 aa26.82■■□□□ 1.88
LIMCH1-211ENST00000509638 VTCN1Q7Z7D3 282 aa26.82■■□□□ 1.88
LIMCH1-211ENST00000509638 LACC1Q8IV20 430 aa26.82■■□□□ 1.88
LIMCH1-211ENST00000509638 ST8SIA1Q92185 356 aa26.82■■□□□ 1.88
LIMCH1-211ENST00000509638 HSH2DQ96JZ2 352 aa26.82■■□□□ 1.88
LIMCH1-211ENST00000509638 DCAF13Q9NV06 445 aaKnown RBP26.82■■□□□ 1.88
LIMCH1-211ENST00000509638 RPS6KA6Q9UK32 745 aa26.82■■□□□ 1.88
LIMCH1-211ENST00000509638 SH3GLB1Q9Y371 365 aa26.82■■□□□ 1.88
LIMCH1-211ENST00000509638 C7orf72A4D263 438 aa26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 FAAHO00519 579 aa26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 SUSD5O60279 629 aa26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 ZNF17P17021 662 aa26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 IDH2P48735 452 aaKnown RBP26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 B3GALT5-AS1P59052 145 aa26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 MS4A2Q01362 244 aa26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 ARHGAP11AQ6P4F7 1023 aa26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 CYP2R1Q6VVX0 501 aa26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 GTPBP8Q8N3Z3 284 aaPredicted RBP26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 PIGQQ9BRB3 760 aa26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 SPRR3Q9UBC9 169 aa26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 TESQ9UGI8 421 aaKnown RBP26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 SAMD4AQ9UPU9 718 aaKnown RBP26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 SLC9A8Q9Y2E8 581 aa26.81■■□□□ 1.88
LIMCH1-211ENST00000509638 OR2M5A3KFT3 312 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 WISP1O95388 367 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 GFRA1P56159 465 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 SESN3P58005 492 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 TMEM44Q2T9K0 475 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 GLYR1Q49A26 553 aaPredicted RBP26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 GFRALQ6UXV0 394 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 EID3Q8N140 333 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 OR4D11Q8NGI4 311 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 OR6T1Q8NGN1 323 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 TMEM234Q8WY98 164 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 EVA1AQ9H8M9 152 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 V9GYQ6 96 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 A0A1B0GTH9 108 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 ZNHIT1O43257 154 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 GCKP35557 465 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 EIF1P41567 113 aaKnown RBP26.8■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms