RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 HSD17B8Q92506 261 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 SMARCD2Q92925 531 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ERMAPQ96PL5 475 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 MNTQ99583 582 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ARHGAP9Q9BRR9 750 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 TSPAN10Q9H1Z9 355 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 METTL17Q9H7H0 456 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 CHMP1AQ9HD42 196 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 RDH8Q9NYR8 311 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 KCND3Q9UK17 655 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 ATXN7L1Q9ULK2 861 aaPredicted RBP8.04□□□□□ -1.12
USP40-203ENST00000427112 CBLCQ9ULV8 474 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 EDARQ9UNE0 448 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 SLC6A5Q9Y345 797 aa8.04□□□□□ -1.12
USP40-203ENST00000427112 MAN2B1O00754 1011 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 RNF13O43567 381 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 TPPPO94811 219 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 RPL3P39023 403 aaKnown RBP8.03□□□□□ -1.12
USP40-203ENST00000427112 MAT1AQ00266 395 aaKnown RBP8.03□□□□□ -1.12
USP40-203ENST00000427112 ST3GAL3Q11203 375 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 NOGQ13253 232 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 LRRC37A5PQ49AS3 106 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ACSM3Q53FZ2 586 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ZNF628Q5EBL2 1059 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 FAM78AQ5JUQ0 283 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ZNF613Q6PF04 617 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ZNF322Q6U7Q0 402 aaPredicted RBP8.03□□□□□ -1.12
USP40-203ENST00000427112 ACBD7Q8N6N7 88 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 COX18Q8N8Q8 333 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ZNF511Q8NB15 262 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 OR5K2Q8NHB8 316 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 COQ8AQ8NI60 647 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ZPLD1Q8TCW7 415 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ZNRF4Q8WWF5 429 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 CNOT9Q92600 299 aaKnown RBP8.03□□□□□ -1.12
USP40-203ENST00000427112 SRA1Q9HD15 236 aaKnown RBP8.03□□□□□ -1.12
USP40-203ENST00000427112 A4GALTQ9NPC4 353 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 EMC3Q9P0I2 261 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 TESQ9UGI8 421 aaKnown RBP8.03□□□□□ -1.12
USP40-203ENST00000427112 RCE1Q9Y256 329 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 SF3B6Q9Y3B4 125 aaKnown RBP8.03□□□□□ -1.12
USP40-203ENST00000427112 DSPPQ9NZW4 1301 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 KIF26AQ9ULI4 1882 aaPredicted RBP8.03□□□□□ -1.12
USP40-203ENST00000427112 A0A1W2PQU0 124 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 CDC14CA4D256 554 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 SELENOFO60613 162 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 MAS1P04201 325 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ZGLP1P0C6A0 271 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 NDUFV2P19404 249 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 FNTBP49356 437 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 VEGFCP49767 419 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ADAM15Q13444 863 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 BEX5Q5H9J7 111 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 MEDAGQ5VYS4 303 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 CNKSR3Q6P9H4 555 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ZNF836Q6ZNA1 936 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 CAMKMTQ7Z624 323 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 GDPD1Q8N9F7 314 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 OR52L1Q8NGH7 329 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 OR2T4Q8NH00 348 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 NKD1Q969G9 470 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 MS4A6EQ96DS6 147 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ELP4Q96EB1 424 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 TMEM43Q9BTV4 400 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 FGF22Q9HCT0 170 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 POT1Q9NUX5 634 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 PPIL1Q9Y3C6 166 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 A0A1W2PRQ8 180 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 SGK494L7N484 410 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 P2RX6O15547 441 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 HCRTR1O43613 425 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 GMDSO60547 372 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 FZD7O75084 574 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 WNT1P04628 370 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ALDOBP05062 364 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 GABRA5P31644 462 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 PPP3R1P63098 170 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 PRR5P85299 388 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 CDK5Q00535 292 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.03□□□□□ -1.12
USP40-203ENST00000427112 ARHGEF6Q15052 776 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ZNF77Q15935 545 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 RPE65Q16518 533 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 HNRNPA1L2Q32P51 320 aaKnown RBP8.03□□□□□ -1.12
USP40-203ENST00000427112 TMEM255AQ5JRV8 349 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 SFRP5Q5T4F7 317 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 TANGO2Q6ICL3 276 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ALKAL2Q6UX46 152 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 TMEM52Q8NDY8 209 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 SNX33Q8WV41 574 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 GIMAP1Q8WWP7 306 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 DVL3Q92997 716 aaPredicted RBP8.03□□□□□ -1.12
USP40-203ENST00000427112 LMF1Q96S06 567 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 DDOQ99489 341 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 TEX12Q9BXU0 123 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 PPP1R3EQ9H7J1 279 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 ACOXLQ9NUZ1 547 aa8.03□□□□□ -1.12
USP40-203ENST00000427112 QSOX1O00391 747 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 KHNYNO15037 678 aaKnown RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 SURF4O15260 269 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms