RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 TIMP4Q99727 224 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 SEMA6CQ9H3T2 930 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 A0A1B0GWA3 101 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 DAPL1A0PJW8 107 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 DYRK3O43781 588 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 RCBTB2O95199 551 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 PPP1R3DO95685 299 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 DRD5P21918 477 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 APEX1P27695 318 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 NR4A2P43354 598 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 COPZ1P61923 177 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 BTG2P78543 158 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 GARNL3Q5VVW2 1013 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 XKRXQ6PP77 449 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 MCATQ8IVS2 390 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 CADM2Q8N3J6 435 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 C19orf47Q8N9M1 422 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 AP3S1Q92572 193 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 RIT1Q92963 219 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 ITFG2Q969R8 447 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 TNFRSF13CQ96RJ3 184 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 FOLH1BQ9HBA9 442 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 POMT2Q9UKY4 750 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 PCDHGB2Q9Y5G2 931 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 OR5K4A6NMS3 321 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 PRR23D1E9PI22 279 aaPredicted RBP16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 CCNKO75909 580 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 PRR23D2P0DMB1 279 aaPredicted RBP16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 IL9P15248 144 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 SCN1BQ07699 218 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 STX4Q12846 297 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 AGAP6Q5VW22 663 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 TMPRSS11FQ6ZWK6 438 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 SETD6Q8TBK2 473 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 RBM18Q96H35 190 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 SPACA7Q96KW9 195 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 AGAP4Q96P64 663 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 TTTY10Q9BZA0 68 aa16.95■□□□□ 0.3
SHKBP1-201ENST00000291842 COL4A2P08572 1712 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 A0A0B4J2E0 115 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 A0A1B0GX12 115 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 FAM86C2PA6NEL3 165 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 E9PI62 339 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 POLR1CO15160 346 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 AK1P00568 194 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 CRMP1Q14194 572 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 ZNF267Q14586 743 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 P2RY14Q15391 338 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 ZNF362Q5T0B9 420 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 ZNF517Q6ZMY9 492 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 OAFQ86UD1 273 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 FAM181AQ8N9Y4 354 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 DNAJA4Q8WW22 397 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 ABHD8Q96I13 439 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 TEAD3Q99594 435 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 ATF6BQ99941 703 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 ZNF559Q9BR84 538 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 CMC2Q9NRP2 79 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 RNF13O43567 381 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 FMO6PO60774 539 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 CSF2P04141 144 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 ACAA2P42765 397 aaKnown RBP16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 PGDP52209 483 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 ACSM1Q08AH1 577 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 GPR50Q13585 617 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 CNIH2Q6PI25 160 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 ARHGEF39Q8N4T4 335 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 SENP5Q96HI0 755 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 MAP3K3Q99759 626 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 LRRC61Q9BV99 259 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 TPSD1Q9BZJ3 242 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 C11orf54Q9H0W9 315 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 BABAM2Q9NXR7 383 aa16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 DNAJB12Q9NXW2 375 aaKnown RBP16.94■□□□□ 0.3
SHKBP1-201ENST00000291842 A8MV72 311 aaPredicted RBP16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 MAOAP21397 527 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 CRYZQ08257 329 aaKnown RBP16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 ZNHIT3Q15649 155 aaPredicted RBP16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 ALG10BQ5I7T1 473 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 RSBN1Q5VWQ0 802 aaPredicted RBP16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 ZNF613Q6PF04 617 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 PARGQ86W56 976 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 UBQLNLQ8IYU4 475 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 Q8N9G6 341 aaPredicted RBP16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 OR4C6Q8NH72 309 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 RNF32Q9H0A6 362 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 FN3KQ9H479 309 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 LRRN3E7EW58 273 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 GTPBP1O00178 669 aaKnown RBP16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 CHP2O43745 196 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 COQ9O75208 318 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 PTP4A3O75365 173 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 HTR3AP46098 478 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 FAM27D1Q5T7N8 215 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 ARL9Q6T311 187 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 RPTNQ6XPR3 784 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 NR2C2APQ86WQ0 139 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 RCBTB1Q8NDN9 531 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 KLHDC7BQ96G42 594 aa16.93■□□□□ 0.3
SHKBP1-201ENST00000291842 PPIL3Q9H2H8 161 aaKnown RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms