RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 WDR60Q8WVS4 1066 aa17.33■□□□□ 0.36
SYNE4-202ENST00000340477 ZNF385DQ9H6B1 395 aa17.33■□□□□ 0.36
SYNE4-202ENST00000340477 MTHFD2LQ9H903 347 aaPredicted RBP17.33■□□□□ 0.36
SYNE4-202ENST00000340477 KLHL14Q9P2G3 628 aa17.33■□□□□ 0.36
SYNE4-202ENST00000340477 ICAM5Q9UMF0 924 aa17.33■□□□□ 0.36
SYNE4-202ENST00000340477 GJE1A6NN92 205 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 SHISA8B8ZZ34 492 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 DYNC1I1O14576 645 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 C1QCP02747 245 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 CHRM4P08173 479 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 SNRPB2P08579 225 aaKnown RBP17.32■□□□□ 0.36
SYNE4-202ENST00000340477 UQCRBP14927 111 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 IL7RP16871 459 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 ADH6P28332 368 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 FOXF1Q12946 379 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 SKP2Q13309 424 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 RGNQ15493 299 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 SGCBQ16585 318 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 TMEM44Q2T9K0 475 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 NDUFAF6Q330K2 333 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 PDSS1Q5T2R2 415 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 DHDDSQ86SQ9 333 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 TNIP2Q8NFZ5 429 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 TMEM234Q8WY98 164 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 WNT2BQ93097 391 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 ARSGQ96EG1 525 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 SLC38A1Q9H2H9 487 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 PAQR5Q9NXK6 330 aaPredicted RBP17.32■□□□□ 0.36
SYNE4-202ENST00000340477 KCNE5Q9UJ90 142 aa17.32■□□□□ 0.36
SYNE4-202ENST00000340477 CENPVL1A0A0U1RR11 272 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 AGAP5A6NIR3 686 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 SLC22A20A6NK97 555 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 EIF1AYO14602 144 aaKnown RBP17.31■□□□□ 0.36
SYNE4-202ENST00000340477 OIP5O43482 229 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 LINGO3P0C6S8 592 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 FCGR2AP12318 317 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 COX6B1P14854 86 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 COL8A1P27658 744 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 CEACAM8P31997 349 aaPredicted RBP17.31■□□□□ 0.36
SYNE4-202ENST00000340477 SLC6A8P48029 635 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 MVDP53602 400 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 RAC1P63000 192 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 SF3A3Q12874 501 aaKnown RBP eCLIP17.31■□□□□ 0.36
SYNE4-202ENST00000340477 QPRTQ15274 297 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 MAPK14Q16539 360 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 PAGE3Q5JUK9 113 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 GCNT6Q5T4J0 391 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 AP1ARQ63HQ0 302 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 OR2A2Q6IF42 318 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 ZNF563Q8TA94 476 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 GPR119Q8TDV5 335 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 ST8SIA1Q92185 356 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 MRGPRX4Q96LA9 322 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 DOCK7Q96N67 2140 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 UCN2Q96RP3 112 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 THUMPD3Q9BV44 507 aaKnown RBP17.31■□□□□ 0.36
SYNE4-202ENST00000340477 NSRP1Q9H0G5 558 aaKnown RBP17.31■□□□□ 0.36
SYNE4-202ENST00000340477 QRSL1Q9H0R6 528 aaKnown RBP17.31■□□□□ 0.36
SYNE4-202ENST00000340477 ARMC7Q9H6L4 198 aa17.31■□□□□ 0.36
SYNE4-202ENST00000340477 PRAMEF27A3QJZ7 478 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 TMIGD3P0DMS9 266 aaPredicted RBP17.3■□□□□ 0.36
SYNE4-202ENST00000340477 BMP5P22003 454 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 OPRM1P35372 400 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 EEF1A1P68104 462 aaKnown RBP17.3■□□□□ 0.36
SYNE4-202ENST00000340477 KCNJ10P78508 379 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 NFYCQ13952 458 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 LARS2Q15031 903 aaKnown RBP17.3■□□□□ 0.36
SYNE4-202ENST00000340477 CDSNQ15517 529 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 ZSWIM7Q19AV6 140 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 LIN52Q52LA3 116 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 EEF1A1P5Q5VTE0 462 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 SP5Q6BEB4 398 aaPredicted RBP17.3■□□□□ 0.36
SYNE4-202ENST00000340477 CGB2Q6NT52 195 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 PPP4R4Q6NUP7 873 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 ESPNLQ6ZVH7 1005 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 SEM1Q6ZVN7 128 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 FBXO27Q8NI29 283 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 SLC38A5Q8WUX1 472 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 TMEM19Q96HH6 336 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 PINK1Q9BXM7 581 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 A4GALTQ9NPC4 353 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 SLC52A3Q9NQ40 469 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 EXOSC3Q9NQT5 275 aaKnown RBP17.3■□□□□ 0.36
SYNE4-202ENST00000340477 CLCF1Q9UBD9 225 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 ZNF629Q9UEG4 869 aaPredicted RBP17.3■□□□□ 0.36
SYNE4-202ENST00000340477 ZNF232Q9UNY5 417 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 ZNF175Q9Y473 711 aa17.3■□□□□ 0.36
SYNE4-202ENST00000340477 A0A0G2JPF8 293 aa17.29■□□□□ 0.36
SYNE4-202ENST00000340477 NKX2-6A6NCS4 301 aa17.29■□□□□ 0.36
SYNE4-202ENST00000340477 HNRNPCL2B2RXH8 293 aa17.29■□□□□ 0.36
SYNE4-202ENST00000340477 HNRNPCL3B7ZW38 293 aa17.29■□□□□ 0.36
SYNE4-202ENST00000340477 HNRNPRO43390 633 aaKnown RBP17.29■□□□□ 0.36
SYNE4-202ENST00000340477 HNRNPCL1O60812 293 aaKnown RBP17.29■□□□□ 0.36
SYNE4-202ENST00000340477 TFPTP0C1Z6 253 aa17.29■□□□□ 0.36
SYNE4-202ENST00000340477 HNRNPCL4P0DMR1 293 aa17.29■□□□□ 0.36
SYNE4-202ENST00000340477 PRKCAP17252 672 aa17.29■□□□□ 0.36
SYNE4-202ENST00000340477 HOXB9P17482 250 aaPredicted RBP17.29■□□□□ 0.36
SYNE4-202ENST00000340477 CTSSP25774 331 aa17.29■□□□□ 0.36
SYNE4-202ENST00000340477 GRNP28799 593 aaKnown RBP17.29■□□□□ 0.36
SYNE4-202ENST00000340477 PGM1P36871 562 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms