RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ZNHIT3Q15649 155 aaPredicted RBP20.86■□□□□ 0.93
CDX1-201ENST00000231656 CASP12Q6UXS9 341 aa20.86■□□□□ 0.93
CDX1-201ENST00000231656 NPSR1Q6W5P4 371 aa20.86■□□□□ 0.93
CDX1-201ENST00000231656 RANBP3LQ86VV4 465 aaPredicted RBP20.86■□□□□ 0.93
CDX1-201ENST00000231656 IQCF1Q8N6M8 205 aa20.86■□□□□ 0.93
CDX1-201ENST00000231656 PIGXQ8TBF5 258 aa20.86■□□□□ 0.93
CDX1-201ENST00000231656 PTPMT1Q8WUK0 201 aaPredicted RBP20.86■□□□□ 0.93
CDX1-201ENST00000231656 ZNF578Q96N58 590 aaPredicted RBP20.86■□□□□ 0.93
CDX1-201ENST00000231656 IL4I1Q96RQ9 567 aa20.86■□□□□ 0.93
CDX1-201ENST00000231656 SPSB2Q99619 263 aa20.86■□□□□ 0.93
CDX1-201ENST00000231656 PNO1Q9NRX1 252 aaKnown RBP20.86■□□□□ 0.93
CDX1-201ENST00000231656 PCDHGA3Q9Y5H0 932 aa20.86■□□□□ 0.93
CDX1-201ENST00000231656 C17orf105B2RV13 164 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 IDSB3KWA1 339 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 PRAMEF2O60811 474 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 IGKV1D-16P01601 117 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 STSP08842 583 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 PSMB9P28065 219 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 SLC15A1P46059 708 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 CDK5Q00535 292 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 DYNC1I2Q13409 638 aaKnown RBP20.85■□□□□ 0.93
CDX1-201ENST00000231656 IRF3Q14653 427 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 GINS1Q14691 196 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 OR4N2Q8NGD1 307 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 FCGR1BQ92637 280 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 TIMMDC1Q9NPL8 285 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 CNOT2Q9NZN8 540 aaKnown RBP20.85■□□□□ 0.93
CDX1-201ENST00000231656 SDK2Q58EX2 2172 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 EFCAB10A6NFE3 127 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 ENTPD6O75354 484 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 BCAS1O75363 584 aaPredicted RBP20.85■□□□□ 0.93
CDX1-201ENST00000231656 HEXBP07686 556 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 GIPRP48546 466 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 RNF144AP50876 292 aaPredicted RBP20.85■□□□□ 0.93
CDX1-201ENST00000231656 NOVA1P51513 510 aaKnown RBP20.85■□□□□ 0.93
CDX1-201ENST00000231656 PGDP52209 483 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 ST3GAL4Q11206 333 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 CTF1Q16619 201 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 FLYWCH1Q4VC44 716 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 MBOAT2Q6ZWT7 520 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 CACTIN-AS1Q8N1I8 211 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 OR8J1Q8NGP2 316 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 FAM46AQ96IP4 442 aaKnown RBP20.85■□□□□ 0.93
CDX1-201ENST00000231656 PRSS27Q9BQR3 290 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 CNPPD1Q9BV87 410 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 PLA2G12AQ9BZM1 189 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 GPN3Q9UHW5 284 aaPredicted RBP20.85■□□□□ 0.93
CDX1-201ENST00000231656 SLC7A7Q9UM01 511 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 ERVK-19Q9WJR5 959 aa20.85■□□□□ 0.93
CDX1-201ENST00000231656 A8MUA0 341 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 KLF4O43474 513 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 FMO6PO60774 539 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 GABARAPO95166 117 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 LYPD3O95274 346 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 CLPSP04118 112 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 GKN3PP0CG01 181 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 ST13P50502 369 aaKnown RBP20.84■□□□□ 0.93
CDX1-201ENST00000231656 AQP6Q13520 282 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 ELAVL1Q15717 326 aaKnown RBP20.84■□□□□ 0.93
CDX1-201ENST00000231656 TMEM164Q5U3C3 297 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 FAAH2Q6GMR7 532 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 ACSM5Q6NUN0 579 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 FAM198BQ6UWH4 519 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 RASSF6Q6ZTQ3 369 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 LANCL3Q6ZV70 420 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 TMPRSS12Q86WS5 348 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 STX19Q8N4C7 294 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 ZNF615Q8N8J6 731 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 TMEM255BQ8WV15 326 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 BCL7BQ9BQE9 202 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 POLDIP3Q9BY77 421 aaKnown RBP20.84■□□□□ 0.93
CDX1-201ENST00000231656 SPRY4Q9C004 299 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 EGLN3Q9H6Z9 239 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 WDR54Q9H977 334 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 CNIH4Q9P003 139 aa20.84■□□□□ 0.93
CDX1-201ENST00000231656 PTPRBP23467 1997 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 TRAPPC13A5PLN9 417 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 DLGAP3O95886 979 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 PIPP12273 146 aaPredicted RBP20.83■□□□□ 0.93
CDX1-201ENST00000231656 FPR3P25089 353 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 OCLNQ16625 522 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 RRM2BQ7LG56 351 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 MRGPREQ86SM8 312 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 TCEANCQ8N8B7 351 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 POGLUT1Q8NBL1 392 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 OR8D4Q8NGM9 314 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 FGF11Q92914 225 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 Q96MT0 163 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 OR10A5Q9H207 317 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 DSN1Q9H410 356 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 EVA1AQ9H8M9 152 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 FOXJ2Q9P0K8 574 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 CLCA3PQ9Y6N3 262 aa20.83■□□□□ 0.93
CDX1-201ENST00000231656 AHCTF1Q8WYP5 2266 aa20.82■□□□□ 0.92
CDX1-201ENST00000231656 SYNDIG1LA6NDD5 238 aa20.82■□□□□ 0.92
CDX1-201ENST00000231656 C9J4A7 227 aa20.82■□□□□ 0.92
CDX1-201ENST00000231656 SLC30A4O14863 429 aa20.82■□□□□ 0.92
CDX1-201ENST00000231656 PRKYO43930 277 aa20.82■□□□□ 0.92
CDX1-201ENST00000231656 PIP5K1CO60331 668 aa20.82■□□□□ 0.92
CDX1-201ENST00000231656 ADRA2AP08913 450 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms