RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 CCDC32Q9BV29 185 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 IL21RQ9HBE5 538 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 H2AFY2Q9P0M6 372 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 PAIP2BQ9ULR5 123 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 SLCO1B1Q9Y6L6 691 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 SPACA6W5XKT8 324 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 SPEGQ15772 3267 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 A0A0C4DFX4 3053 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 TRAPPC13A5PLN9 417 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 GALR3O60755 368 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 NID1P14543 1247 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 CELP19835 753 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 TMED10P49755 219 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 YPEL5P62699 121 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 TAB1Q15750 504 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 FCRLBQ6BAA4 426 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 OR9A4Q8NGU2 314 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 RSC1A1Q92681 617 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 ART5Q96L15 291 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 TBX5Q99593 518 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 KATNB1Q9BVA0 655 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 TWSG1Q9GZX9 223 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 MIXL1Q9H2W2 232 aa17.04■□□□□ 0.32
SHKBP1-201ENST00000291842 A0A0J9YY10 115 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 IQCMA0A1B0GVH7 501 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 UNC119BA6NIH7 251 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 A8MU76 341 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 APOA1P02647 267 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 DBIP07108 87 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 THBS1P07996 1170 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 MGAT2Q10469 447 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 FAM131AQ6UXB0 335 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 QSOX2Q6ZRP7 698 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 CXXC5Q7LFL8 322 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 NRARPQ7Z6K4 114 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 CDRT4Q8N9R6 151 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 FANK1Q8TC84 345 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 GPBAR1Q8TDU6 330 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 GRHL3Q8TE85 626 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 TMEM239Q8WW34 195 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 SPRYD4Q8WW59 207 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 NEDD4LQ96PU5 975 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 SIDT1Q9NXL6 827 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 CDHR4A6H8M9 788 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 PLOD3O60568 738 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 IGHV4-34P06331 123 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 GABRA5P31644 462 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 LTBRP36941 435 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 ZNF155Q12901 538 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 ZNF649Q9BS31 505 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 HCAR1Q9BXC0 346 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 MARCH7Q9H992 704 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 POT1Q9NUX5 634 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 CYP8B1Q9UNU6 501 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 TRAPPC4Q9Y296 219 aa17.03■□□□□ 0.32
SHKBP1-201ENST00000291842 CDC123O75794 336 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 NCR1O76036 304 aa17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 ST6GAL1P15907 406 aa17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 RPS4Y1P22090 263 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 HTR1FP30939 366 aa17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 SSTR4P31391 388 aa17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 SLC9A3P48764 834 aa17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 UBE2IP63279 158 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 PLAURQ03405 335 aa17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 EIF2B5Q13144 721 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 DSG2Q14126 1118 aa17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 LRIT3Q3SXY7 679 aa17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 NXNL2Q5VZ03 156 aa17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 AKAP14Q86UN6 197 aa17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 NLGN4YQ8NFZ3 816 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 OR52R1Q8NGF1 315 aa17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 ANKRD9Q96BM1 317 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 DIRAS2Q96HU8 199 aa17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 ISG20L2Q9H9L3 353 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 DUSP22Q9NRW4 184 aa17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 ZNF223Q9UK11 482 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-201ENST00000291842 OR2W5A6NFC9 320 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 DAB2P98082 770 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 RAB30Q15771 203 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 EOGTQ5NDL2 527 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 UTS2BQ765I0 119 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 RNF44Q7L0R7 432 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 KLBQ86Z14 1044 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 ZNF655Q8N720 491 aaPredicted RBP17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 OR4N2Q8NGD1 307 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 OR13C2Q8NGS9 318 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 CD180Q99467 661 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 SRRQ9GZT4 340 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 TNFRSF10DQ9UBN6 386 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 ENTPD2Q9Y5L3 495 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 LAMA1P25391 3075 aa17.02■□□□□ 0.31
SHKBP1-201ENST00000291842 C2orf92A0A1B0GVN3 265 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 CD8B2A6NJW9 211 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 DVL2O14641 736 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 CASKO14936 926 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 HYAL3O43820 417 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 CD8BP10966 210 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 POU6F2P78424 691 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 CSTF1Q05048 431 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 SFSWAPQ12872 951 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 349.1 ms