RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 ARL14EPQ8N8R7 260 aaPredicted RBP12.03□□□□□ -0.48
SFSWAP-209ENST00000540469 ZNF454Q8N9F8 522 aa12.03□□□□□ -0.48
SFSWAP-209ENST00000540469 GCDHQ92947 438 aaPredicted RBP12.03□□□□□ -0.48
SFSWAP-209ENST00000540469 F2RL3Q96RI0 385 aa12.03□□□□□ -0.48
SFSWAP-209ENST00000540469 ELAC1Q9H777 363 aaKnown RBP12.03□□□□□ -0.48
SFSWAP-209ENST00000540469 HPF1Q9NWY4 346 aa12.03□□□□□ -0.48
SFSWAP-209ENST00000540469 IGLV3-16A0A075B6K0 115 aa12.02□□□□□ -0.48
SFSWAP-209ENST00000540469 SLCO2B1O94956 709 aa12.02□□□□□ -0.48
SFSWAP-209ENST00000540469 VNN2O95498 520 aa12.02□□□□□ -0.48
SFSWAP-209ENST00000540469 GATMP50440 423 aa12.02□□□□□ -0.48
SFSWAP-209ENST00000540469 TSPAN31Q12999 210 aa12.02□□□□□ -0.48
SFSWAP-209ENST00000540469 TRAM2Q15035 370 aa12.02□□□□□ -0.48
SFSWAP-209ENST00000540469 ZDHHC20Q5W0Z9 365 aa12.02□□□□□ -0.48
SFSWAP-209ENST00000540469 C11orf88Q6PI97 169 aa12.02□□□□□ -0.48
SFSWAP-209ENST00000540469 Q6ZTK2 550 aa12.02□□□□□ -0.48
SFSWAP-209ENST00000540469 COMTD1Q86VU5 262 aa12.02□□□□□ -0.48
SFSWAP-209ENST00000540469 ZFPM2Q8WW38 1151 aa12.02□□□□□ -0.48
SFSWAP-209ENST00000540469 BBS4Q96RK4 519 aa12.02□□□□□ -0.48
SFSWAP-209ENST00000540469 NDC1Q9BTX1 674 aa12.02□□□□□ -0.48
SFSWAP-209ENST00000540469 MFSD2BA6NFX1 497 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 TMEM189-UBE2V1I3L0A0 370 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 FOXE1O00358 373 aaPredicted RBP12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 OR5F1O95221 314 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 FGBP02675 491 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 CLTBP09497 229 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 ANKRD34CP0C6C1 535 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 NPPBP16860 134 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 RAB3AP20336 220 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 HLA-FP30511 346 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 LMAN2Q12907 356 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 METTL11BQ5VVY1 283 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 ADCK2Q7Z695 626 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 PDZD9Q8IXQ8 264 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 SORCS1Q8WY21 1168 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 UBE2E3Q969T4 207 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 ZCCHC2Q9C0B9 1178 aaKnown RBP12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 SHARPINQ9H0F6 387 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 MAN2C1Q9NTJ4 1040 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 MED11Q9P086 117 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 ZNF175Q9Y473 711 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 SIRT4Q9Y6E7 314 aaPredicted RBP12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 TUBAL3A6NHL2 446 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 RNF144AP50876 292 aaPredicted RBP12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 CD300LDQ6UXZ3 194 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 LSRQ86X29 649 aaPredicted RBP12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 NRMQ8IXM6 262 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 MORN4Q8NDC4 146 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 PTP4A1Q93096 173 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 IL17FQ96PD4 163 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 PTPN18Q99952 460 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 RSPO3Q9BXY4 272 aaPredicted RBP12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 LDAHQ9H6V9 325 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 FANCFQ9NPI8 374 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 MLXQ9UH92 298 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 LSM7Q9UK45 103 aaKnown RBP12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 OR51B4Q9Y5P0 310 aa12.02□□□□□ -0.49
SFSWAP-209ENST00000540469 PLXNA3P51805 1871 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 MT-ND5P03915 603 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 CKMP06732 381 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 CD70P32970 193 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 RGS8P57771 180 aaPredicted RBP12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 ZNF169Q14929 603 aaPredicted RBP12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 ZNF311Q5JNZ3 666 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 NHLRC3Q5JS37 347 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 OR5M10Q6IEU7 315 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 LRRC56Q8IYG6 542 aaPredicted RBP12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 STPG2Q8N412 459 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 OR2T33Q8NG76 320 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 OR4Q3Q8NH05 313 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 BBS10Q8TAM1 723 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 SAMD8Q96LT4 415 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 KLF16Q9BXK1 252 aaPredicted RBP12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 HINT3Q9NQE9 182 aaKnown RBP12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 GLOD5A6NK44 160 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 SPDEFO95238 335 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 EOMESO95936 686 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 CXCL2P19875 107 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 HTR1FP30939 366 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 PYCR1P32322 319 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 STAT5AP42229 794 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 STXBP1P61764 594 aaKnown RBP12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 ST3GAL3Q11203 375 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 PGGHGQ32M88 737 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 ACSM3Q53FZ2 586 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 NXPE4Q6UWF7 544 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 RPTNQ6XPR3 784 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 TMEM99Q8N816 258 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 SLC22A12Q96S37 553 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 CACYBPQ9HB71 228 aaKnown RBP12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 GPN1Q9HCN4 374 aaPredicted RBP12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 KLHL28Q9NXS3 571 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 ACAD8Q9UKU7 415 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 LRFN2Q9ULH4 789 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 CLEC4EQ9ULY5 219 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 PLAGL1Q9UM63 463 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 BACE2Q9Y5Z0 518 aa12.01□□□□□ -0.49
SFSWAP-209ENST00000540469 A0A1B0GW55 424 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 CREBL2O60519 120 aaPredicted RBP12□□□□□ -0.49
SFSWAP-209ENST00000540469 DUSP11O75319 330 aaKnown RBP12□□□□□ -0.49
SFSWAP-209ENST00000540469 NMBP08949 121 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms