RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SIDT2Q8NBJ9 832 aaKnown RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 NSMAFQ92636 917 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 MARC2Q969Z3 335 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 RSPRY1Q96DX4 576 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 PRRC1Q96M27 445 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF582Q96NG8 517 aaPredicted RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 MTERF1Q99551 399 aaKnown RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 YIPF4Q9BSR8 244 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 WACQ9BTA9 647 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 REEP4Q9H6H4 257 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 TAS2R5Q9NYW4 299 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ARL5AQ9Y689 179 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ZFP37Q9Y6Q3 630 aaPredicted RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF780BQ9Y6R6 833 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 LRRC72A6NJI9 287 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 TLR4O00206 839 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 SAP18O00422 153 aaKnown RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 LRRTM2O43300 516 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 EOMESO95936 686 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 HPP00738 406 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 GJA5P36382 358 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 IFNGR2P38484 337 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ARHGAP19Q14CB8 494 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 SLC27A4Q6P1M0 643 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 TPRG1Q6ZUI0 275 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 PARGQ86W56 976 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 PAQR4Q8N4S7 273 aaPredicted RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 OR4K5Q8NGD3 323 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 EDAQ92838 391 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 RBPMSQ93062 196 aaKnown RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 FAIM2Q9BWQ8 316 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 KLF16Q9BXK1 252 aaPredicted RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 TUBA4BQ9H853 241 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ASH2LQ9UBL3 628 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 A0A087WUU8 490 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 A0A0B4J2A0 478 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ARHGEF33A8MVX0 844 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 C9J4A7 227 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 RNGTTO60942 597 aaKnown RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 VIPP01282 170 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 GP1BAP07359 652 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ZGLP1P0C6A0 271 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 SDC2P34741 201 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 RPL4P36578 427 aaKnown RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 CDKN1CP49918 316 aaPredicted RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 IL18Q14116 193 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 DOC2AQ14183 400 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 MED22Q15528 200 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 SLC22A10Q63ZE4 541 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 MZT2BQ6NZ67 158 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 DRAM2Q6UX65 266 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 TEFMQ96QE5 360 aaKnown RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 PRRG3Q9BZD7 231 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 CD93Q9NPY3 652 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 LHX9Q9NQ69 397 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 SHPKQ9UHJ6 478 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 NTNG1Q9Y2I2 539 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 PRSS21Q9Y6M0 314 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 GASTP01350 101 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 CD52P31358 61 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 PTH2RP49190 550 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF136P52737 540 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 HBA1P69905 142 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 QPRTQ15274 297 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 FAM46CQ5VWP2 391 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 UQCC3Q6UW78 93 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF620Q6ZNG0 422 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 CLEC1AQ8NC01 280 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF431Q8TF32 576 aaPredicted RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 CAMK1GQ96NX5 476 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 UCK1Q9HA47 277 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ZDHHC4Q9NPG8 344 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 MARCH2Q9P0N8 246 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 BRWD3Q6RI45 1802 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 RHPN2P1A8MT19 583 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 MMP20O60882 483 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 IFNA7P01567 189 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 RPN2P04844 631 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 LYL1P12980 280 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 CD1CP29017 333 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 IMPA1P29218 277 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 CEBPGP53567 150 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 TAS2R50P59544 299 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 HGFACQ04756 655 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 WSCD2Q2TBF2 565 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 FAM69AQ5T7M9 428 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 TMEM150AQ86TG1 271 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 MOSPD2Q8NHP6 518 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 JSRP1Q96MG2 331 aaPredicted RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 CLEC4MQ9H2X3 399 aaPredicted RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 GALNT9Q9HCQ5 603 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 CTPS2Q9NRF8 586 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 DECR2Q9NUI1 292 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ERVK13-1Q9NX77 482 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 MS4A12Q9NXJ0 267 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 CLEC2DQ9UHP7 191 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 MAP4K5Q9Y4K4 846 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 TIMM10BQ9Y5J6 103 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 WASHC1A8K0Z3 465 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF254O75437 659 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms