RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 PRKACGP22612 351 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 HOXC5Q00444 222 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 PLCXD2Q0VAA5 305 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 PIN1Q13526 163 aaPredicted RBP17.14■□□□□ 0.33
CLN3-206ENST00000360019 BTBD16Q32M84 506 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 ANKRD34AQ69YU3 496 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 HIPK1Q86Z02 1210 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 OR52J3Q8NH60 311 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 OMA1Q96E52 524 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 CDV3Q9UKY7 258 aaKnown RBP17.14■□□□□ 0.33
CLN3-206ENST00000360019 ALPLP05186 524 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 OTX2P32243 289 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 LIMS1P48059 325 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 ZNF136P52737 540 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 PSMD4P55036 377 aaKnown RBP17.13■□□□□ 0.33
CLN3-206ENST00000360019 RGS8P57771 180 aaPredicted RBP17.13■□□□□ 0.33
CLN3-206ENST00000360019 PPP2R2BQ00005 443 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 DAG1Q14118 895 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 FGFBP1Q14512 234 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 SSPNQ14714 243 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 PLAG1Q6DJT9 500 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 NDUFAF7Q7L592 441 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 MAGEE2Q8TD90 523 aaPredicted RBP17.13■□□□□ 0.33
CLN3-206ENST00000360019 SDCCAG3Q96C92 435 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 DHRS1Q96LJ7 313 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 GPR87Q9BY21 358 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 SMURF2Q9HAU4 748 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 ASCL3Q9NQ33 180 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 C8orf4Q9NR00 106 aa17.13■□□□□ 0.33
CLN3-206ENST00000360019 MRTO4Q9UKD2 239 aaKnown RBP17.13■□□□□ 0.33
CLN3-206ENST00000360019 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.12■□□□□ 0.33
CLN3-206ENST00000360019 H0YJX3 145 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 ABCB7O75027 752 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 REM1O75628 298 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 ZFAND5O76080 213 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 UTS2O95399 124 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 CYP4B1P13584 511 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 PRG2P13727 222 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 RBMS1P29558 406 aaKnown RBP17.12■□□□□ 0.33
CLN3-206ENST00000360019 ALDH3A2P51648 485 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 HMGA2P52926 109 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 EXT1Q16394 746 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 EXOC3L2Q2M3D2 409 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 CYP4Z1Q86W10 505 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 CNOT9Q92600 299 aaKnown RBP17.12■□□□□ 0.33
CLN3-206ENST00000360019 NRBF2Q96F24 287 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 PRRC1Q96M27 445 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 OSBPL10Q9BXB5 764 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 GABARAPL1Q9H0R8 117 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 NMNAT1Q9HAN9 279 aaPredicted RBP17.12■□□□□ 0.33
CLN3-206ENST00000360019 CTPS2Q9NRF8 586 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 UBQLN4Q9NRR5 601 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 MRPS18BQ9Y676 258 aaKnown RBP17.12■□□□□ 0.33
CLN3-206ENST00000360019 WWP2O00308 870 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 GADD45GO95257 159 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 NADKO95544 446 aaPredicted RBP17.12■□□□□ 0.33
CLN3-206ENST00000360019 GKN3PP0CG01 181 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 IL12BP29460 328 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 ARHGDIAP52565 204 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 PSPHP78330 225 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 IL10RAQ13651 578 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 TAF11Q15544 211 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 KLHL26Q53HC5 615 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 APOOLQ6UXV4 268 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 DTX1Q86Y01 620 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 OR5L2Q8NGL0 311 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 NKD1Q969G9 470 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 ZNF160Q9HCG1 818 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.12■□□□□ 0.33
CLN3-206ENST00000360019 DNAJB12Q9NXW2 375 aaKnown RBP17.12■□□□□ 0.33
CLN3-206ENST00000360019 PDP1Q9P0J1 537 aaPredicted RBP17.12■□□□□ 0.33
CLN3-206ENST00000360019 NTNG1Q9Y2I2 539 aa17.12■□□□□ 0.33
CLN3-206ENST00000360019 ZFHX4Q86UP3 3567 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 PCSK5Q92824 1860 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 NSG1A0A0A6YYJ2 146 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 SERINC4A6NH21 518 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 MASP2O00187 686 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 ICOSLGO75144 302 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 OXSR1O95747 527 aaPredicted RBP17.11■□□□□ 0.33
CLN3-206ENST00000360019 CD82P27701 267 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 KRT20P35900 424 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 NRG3P56975 720 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 FOXD4Q12950 439 aaPredicted RBP17.11■□□□□ 0.33
CLN3-206ENST00000360019 COLEC12Q5KU26 742 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 GRAMD2AQ8IUY3 354 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 PIK3C3Q8NEB9 887 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 M1APQ8TC57 530 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 ARSGQ96EG1 525 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 HOXD1Q9GZZ0 328 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 ARMC7Q9H6L4 198 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 MMP25Q9NPA2 562 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 MAN2C1Q9NTJ4 1040 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 USE1Q9NZ43 259 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 MYOTQ9UBF9 498 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 NPFFR2Q9Y5X5 522 aa17.11■□□□□ 0.33
CLN3-206ENST00000360019 TRBV4-1A0A0J9YWV2 114 aa17.1■□□□□ 0.33
CLN3-206ENST00000360019 CPSF4LA6NMK7 179 aaKnown RBP17.1■□□□□ 0.33
CLN3-206ENST00000360019 ADAM11O75078 769 aa17.1■□□□□ 0.33
CLN3-206ENST00000360019 UGT2B11O75310 529 aa17.1■□□□□ 0.33
CLN3-206ENST00000360019 HPRP00739 348 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms