RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 CENPQQ7L2Z9 268 aaPredicted RBP17.68■□□□□ 0.42
CLN3-242ENST00000635958 NLRP10Q86W26 655 aa17.68■□□□□ 0.42
CLN3-242ENST00000635958 ZNF652Q9Y2D9 606 aa17.68■□□□□ 0.42
CLN3-242ENST00000635958 LRRFIP2Q9Y608 721 aaKnown RBP17.68■□□□□ 0.42
CLN3-242ENST00000635958 AFDNP55196 1824 aaKnown RBP17.67■□□□□ 0.42
CLN3-242ENST00000635958 EN1Q05925 392 aaPredicted RBP17.67■□□□□ 0.42
CLN3-242ENST00000635958 SMIM5Q71RC9 77 aa17.67■□□□□ 0.42
CLN3-242ENST00000635958 ANKRD36CQ5JPF3 1778 aa17.66■□□□□ 0.42
CLN3-242ENST00000635958 BCORQ6W2J9 1755 aa17.66■□□□□ 0.42
CLN3-242ENST00000635958 BAG6P46379 1132 aa17.66■□□□□ 0.42
CLN3-242ENST00000635958 ATP8B2P98198 1209 aa17.66■□□□□ 0.42
CLN3-242ENST00000635958 EZH2Q15910 746 aaKnown RBP17.66■□□□□ 0.42
CLN3-242ENST00000635958 KAZALD1Q96I82 304 aa17.66■□□□□ 0.42
CLN3-242ENST00000635958 BCL2L12Q9HB09 334 aa17.66■□□□□ 0.42
CLN3-242ENST00000635958 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.65■□□□□ 0.42
CLN3-242ENST00000635958 ZBTB47Q9UFB7 747 aaPredicted RBP17.65■□□□□ 0.42
CLN3-242ENST00000635958 ZPR1O75312 459 aa17.65■□□□□ 0.42
CLN3-242ENST00000635958 PCCAP05165 728 aaPredicted RBP17.65■□□□□ 0.42
CLN3-242ENST00000635958 RFC4P35249 363 aa17.65■□□□□ 0.42
CLN3-242ENST00000635958 MTX1Q13505 466 aa17.65■□□□□ 0.42
CLN3-242ENST00000635958 PARP10Q53GL7 1025 aa17.65■□□□□ 0.42
CLN3-242ENST00000635958 DEFB132Q7Z7B7 95 aa17.65■□□□□ 0.42
CLN3-242ENST00000635958 USP42Q9H9J4 1324 aaKnown RBP17.65■□□□□ 0.42
CLN3-242ENST00000635958 GPTP24298 496 aa17.64■□□□□ 0.41
CLN3-242ENST00000635958 ZNF827Q17R98 1081 aa17.64■□□□□ 0.41
CLN3-242ENST00000635958 USPL1Q5W0Q7 1092 aa17.64■□□□□ 0.41
CLN3-242ENST00000635958 ZBTB38Q8NAP3 1195 aaPredicted RBP17.64■□□□□ 0.41
CLN3-242ENST00000635958 SUCLG2Q96I99 432 aa17.64■□□□□ 0.41
CLN3-242ENST00000635958 UBN2Q6ZU65 1347 aa17.64■□□□□ 0.41
CLN3-242ENST00000635958 SCN7AQ01118 1682 aa17.64■□□□□ 0.41
CLN3-242ENST00000635958 UBE3BQ7Z3V4 1068 aa17.63■□□□□ 0.41
CLN3-242ENST00000635958 SRP68Q9UHB9 627 aaKnown RBP17.63■□□□□ 0.41
CLN3-242ENST00000635958 PHF14O94880 888 aa17.63■□□□□ 0.41
CLN3-242ENST00000635958 SMC5Q8IY18 1101 aa17.63■□□□□ 0.41
CLN3-242ENST00000635958 FLAD1Q8NFF5 587 aa17.63■□□□□ 0.41
CLN3-242ENST00000635958 C4AP0C0L4 1744 aa17.62■□□□□ 0.41
CLN3-242ENST00000635958 HMMRO75330 724 aa17.62■□□□□ 0.41
CLN3-242ENST00000635958 SSH3Q8TE77 659 aa17.62■□□□□ 0.41
CLN3-242ENST00000635958 NIP7Q9Y221 180 aaKnown RBP eCLIP17.62■□□□□ 0.41
CLN3-242ENST00000635958 CDHR2Q9BYE9 1310 aa17.61■□□□□ 0.41
CLN3-242ENST00000635958 POLA2Q14181 598 aa17.61■□□□□ 0.41
CLN3-242ENST00000635958 RABL6Q3YEC7 729 aaPredicted RBP17.61■□□□□ 0.41
CLN3-242ENST00000635958 PLA2G12BQ9BX93 195 aa17.61■□□□□ 0.41
CLN3-242ENST00000635958 DCTPP1Q9H773 170 aa17.61■□□□□ 0.41
CLN3-242ENST00000635958 TFCP2L1Q9NZI6 479 aa17.61■□□□□ 0.41
CLN3-242ENST00000635958 PNMA6EA0A0J9YXQ4 647 aa17.61■□□□□ 0.41
CLN3-242ENST00000635958 SUSD4Q5VX71 490 aa17.61■□□□□ 0.41
CLN3-242ENST00000635958 PPP1R42Q7Z4L9 355 aa17.61■□□□□ 0.41
CLN3-242ENST00000635958 JARID2Q92833 1246 aaPredicted RBP17.61■□□□□ 0.41
CLN3-242ENST00000635958 GCC1Q96CN9 775 aa17.61■□□□□ 0.41
CLN3-242ENST00000635958 BICC1Q9H694 974 aaKnown RBP17.61■□□□□ 0.41
CLN3-242ENST00000635958 FOXO4P98177 505 aa17.6■□□□□ 0.41
CLN3-242ENST00000635958 EPHA10Q5JZY3 1008 aa17.6■□□□□ 0.41
CLN3-242ENST00000635958 TBC1D9BQ66K14 1250 aa17.6■□□□□ 0.41
CLN3-242ENST00000635958 FAM89AQ96GI7 184 aa17.6■□□□□ 0.41
CLN3-242ENST00000635958 TRMT112Q9UI30 125 aaKnown RBP17.6■□□□□ 0.41
CLN3-242ENST00000635958 SRCAPQ6ZRS2 3230 aa17.6■□□□□ 0.41
CLN3-242ENST00000635958 UTP14AQ9BVJ6 771 aaKnown RBP17.59■□□□□ 0.41
CLN3-242ENST00000635958 NTSR2O95665 410 aa17.58■□□□□ 0.41
CLN3-242ENST00000635958 GYS1P13807 737 aa17.58■□□□□ 0.41
CLN3-242ENST00000635958 SLC15A2Q16348 729 aa17.58■□□□□ 0.41
CLN3-242ENST00000635958 SRGAP3O43295 1099 aa17.58■□□□□ 0.4
CLN3-242ENST00000635958 COL23A1Q86Y22 540 aaPredicted RBP17.58■□□□□ 0.4
CLN3-242ENST00000635958 SETDB2Q96T68 719 aa17.58■□□□□ 0.4
CLN3-242ENST00000635958 SH3TC1Q8TE82 1336 aa17.57■□□□□ 0.4
CLN3-242ENST00000635958 ANO8Q9HCE9 1232 aaPredicted RBP17.57■□□□□ 0.4
CLN3-242ENST00000635958 PNPLA7Q6ZV29 1317 aa17.57■□□□□ 0.4
CLN3-242ENST00000635958 CSF1RP07333 972 aa17.56■□□□□ 0.4
CLN3-242ENST00000635958 RTL5Q5HYW3 569 aaPredicted RBP17.56■□□□□ 0.4
CLN3-242ENST00000635958 SYNE4Q8N205 404 aa17.56■□□□□ 0.4
CLN3-242ENST00000635958 STK32BQ9NY57 414 aa17.56■□□□□ 0.4
CLN3-242ENST00000635958 TUBGCP6Q96RT7 1819 aa17.56■□□□□ 0.4
CLN3-242ENST00000635958 IRS4O14654 1257 aaPredicted RBP17.56■□□□□ 0.4
CLN3-242ENST00000635958 TM4SF1P30408 202 aa17.56■□□□□ 0.4
CLN3-242ENST00000635958 HSP90B1P14625 803 aaKnown RBP17.55■□□□□ 0.4
CLN3-242ENST00000635958 NFIXQ14938 502 aa17.55■□□□□ 0.4
CLN3-242ENST00000635958 LMBR1LQ6UX01 489 aa17.55■□□□□ 0.4
CLN3-242ENST00000635958 NYXQ9GZU5 481 aa17.55■□□□□ 0.4
CLN3-242ENST00000635958 COL24A1Q17RW2 1714 aa17.55■□□□□ 0.4
CLN3-242ENST00000635958 SLC10A5Q5PT55 438 aa17.54■□□□□ 0.4
CLN3-242ENST00000635958 QSER1Q2KHR3 1735 aa17.54■□□□□ 0.4
CLN3-242ENST00000635958 PDE8AO60658 829 aa17.54■□□□□ 0.4
CLN3-242ENST00000635958 RFX5P48382 616 aaPredicted RBP17.54■□□□□ 0.4
CLN3-242ENST00000635958 NUCB1Q02818 461 aa17.54■□□□□ 0.4
CLN3-242ENST00000635958 BICDL1Q6ZP65 573 aa17.54■□□□□ 0.4
CLN3-242ENST00000635958 NLGN1Q8N2Q7 840 aa17.54■□□□□ 0.4
CLN3-242ENST00000635958 DDRGK1Q96HY6 314 aa17.54■□□□□ 0.4
CLN3-242ENST00000635958 CARMIL3Q8ND23 1372 aa17.53■□□□□ 0.4
CLN3-242ENST00000635958 DEKP35659 375 aaKnown RBP17.53■□□□□ 0.4
CLN3-242ENST00000635958 TPTE2Q6XPS3 522 aa17.53■□□□□ 0.4
CLN3-242ENST00000635958 BACH2Q9BYV9 841 aa17.53■□□□□ 0.4
CLN3-242ENST00000635958 PDZRN3Q9UPQ7 1066 aa17.53■□□□□ 0.4
CLN3-242ENST00000635958 PDE4AP27815 886 aa17.52■□□□□ 0.4
CLN3-242ENST00000635958 TTLL11Q8NHH1 800 aa17.52■□□□□ 0.4
CLN3-242ENST00000635958 COPRSQ9NQ92 184 aa17.52■□□□□ 0.4
CLN3-242ENST00000635958 FAM177BA6PVY3 158 aa17.51■□□□□ 0.39
CLN3-242ENST00000635958 CTSWP56202 376 aa17.51■□□□□ 0.39
CLN3-242ENST00000635958 HSP90AB4PQ58FF6 505 aa17.51■□□□□ 0.39
CLN3-242ENST00000635958 NBPF5PQ86XG9 351 aaPredicted RBP17.51■□□□□ 0.39
CLN3-242ENST00000635958 RAB11FIP3O75154 756 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms