RNA–Protein interactions for RNA: ENST00000610726.4

CSDE1-218, Transcript of cold shock domain containing E1, humanhuman

TSL 5 BASIC

Gene CSDE1, Length 4,312 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-218ENST00000610726 UTP14AQ9BVJ6 771 aaKnown RBP8.57□□□□□ -1.04
CSDE1-218ENST00000610726 BRPF3Q9ULD4 1205 aa8.57□□□□□ -1.04
CSDE1-218ENST00000610726 AATKQ6ZMQ8 1374 aa8.57□□□□□ -1.04
CSDE1-218ENST00000610726 TPM1P09493 284 aa8.57□□□□□ -1.04
CSDE1-218ENST00000610726 TRIM5Q9C035 493 aa8.57□□□□□ -1.04
CSDE1-218ENST00000610726 TSPY26PQ9H489 355 aa8.57□□□□□ -1.04
CSDE1-218ENST00000610726 SH2B1Q9NRF2 756 aaPredicted RBP8.57□□□□□ -1.04
CSDE1-218ENST00000610726 RBM8AQ9Y5S9 174 aaKnown RBP8.57□□□□□ -1.04
CSDE1-218ENST00000610726 KIAA0232Q92628 1395 aa8.57□□□□□ -1.04
CSDE1-218ENST00000610726 PHKG2P15735 406 aa8.57□□□□□ -1.04
CSDE1-218ENST00000610726 JMYQ8N9B5 988 aa8.57□□□□□ -1.04
CSDE1-218ENST00000610726 ANKRD20A12PQ8NF67 263 aa8.57□□□□□ -1.04
CSDE1-218ENST00000610726 PLBD2Q8NHP8 589 aa8.57□□□□□ -1.04
CSDE1-218ENST00000610726 NEK1Q96PY6 1258 aa8.57□□□□□ -1.04
CSDE1-218ENST00000610726 TNMDQ9H2S6 317 aa8.57□□□□□ -1.04
CSDE1-218ENST00000610726 ZNF521Q96K83 1311 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 IFIT3O14879 490 aaKnown RBP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 HCLS1P14317 486 aaPredicted RBP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 LRRIQ1Q96JM4 1722 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 KDM2BQ8NHM5 1336 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 ZNF335Q9H4Z2 1342 aaPredicted RBP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 TTF1Q15361 905 aaPredicted RBP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 SLC9C2Q5TAH2 1124 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 TRMT2AQ8IZ69 625 aaKnown RBP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 NECAB1Q8N987 351 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 ZNF622Q969S3 477 aaKnown RBP eCLIP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 CCDC43Q96MW1 224 aaKnown RBP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 RTCBQ9Y3I0 505 aaKnown RBP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 SHROOM2Q13796 1616 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 RNF17Q9BXT8 1623 aaKnown RBP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 TPM2P07951 284 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 HMGB1P09429 215 aaKnown RBP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 NMIQ13287 307 aaPredicted RBP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 OLFM4Q6UX06 510 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 CCDC144CPQ8IYA2 1237 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 BRF1Q92994 677 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 SUCLG2Q96I99 432 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 ZNF594Q96JF6 807 aaPredicted RBP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 TMX3Q96JJ7 454 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 CFAP45Q9UL16 551 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 ATP7BP35670 1465 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 IGSF1Q8N6C5 1336 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 GOLGA8BA8MQT2 603 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 PDE4CQ08493 712 aa8.56□□□□□ -1.04
CSDE1-218ENST00000610726 NAT10Q9H0A0 1025 aaKnown RBP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 TFIP11Q9UBB9 837 aaKnown RBP8.56□□□□□ -1.04
CSDE1-218ENST00000610726 SYNMO15061 1565 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 GNPATO15228 680 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 USP44Q9H0E7 712 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 ABCA9Q8IUA7 1624 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 UQCRFS1P1P0C7P4 283 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 HMGB2P26583 209 aaKnown RBP8.55□□□□□ -1.04
CSDE1-218ENST00000610726 GCKRQ14397 625 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 SOGA3Q5TF21 947 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 TPTE2Q6XPS3 522 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 MICU3Q86XE3 530 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 IQCA1Q86XH1 822 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 CCAR2Q8N163 923 aaKnown RBP8.55□□□□□ -1.04
CSDE1-218ENST00000610726 ANO8Q9HCE9 1232 aaPredicted RBP8.55□□□□□ -1.04
CSDE1-218ENST00000610726 PAG1Q9NWQ8 432 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 WWC3Q9ULE0 1092 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 MPHOSPH10O00566 681 aaKnown RBP8.55□□□□□ -1.04
CSDE1-218ENST00000610726 CHMLP26374 656 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 C8orf76Q96K31 380 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 SLC12A7Q9Y666 1083 aa8.55□□□□□ -1.04
CSDE1-218ENST00000610726 MAP3K4Q9Y6R4 1608 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 UNC13BO14795 1591 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 SYCE3A1L190 88 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 LETM1O95202 739 aaPredicted RBP8.54□□□□□ -1.04
CSDE1-218ENST00000610726 CCDC192P0DO97 292 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 GJB2P29033 226 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 MCMDC2Q4G0Z9 681 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 CCDC24Q8N4L8 307 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 DBNDD2Q9BQY9 259 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 TTC41PQ6P2S7 1318 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 CAMK4Q16566 473 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 NDUFB9Q9Y6M9 179 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 CYP7A1P22680 504 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 TXLNAP40222 546 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 ZNF444Q8N0Y2 327 aaPredicted RBP8.54□□□□□ -1.04
CSDE1-218ENST00000610726 CRACR2BQ8N4Y2 399 aaPredicted RBP8.54□□□□□ -1.04
CSDE1-218ENST00000610726 SPC24Q8NBT2 197 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 GRPEL1Q9HAV7 217 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 TFCP2L1Q9NZI6 479 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 NSFL1CQ9UNZ2 370 aaKnown RBP8.54□□□□□ -1.04
CSDE1-218ENST00000610726 JAG2Q9Y219 1238 aa8.54□□□□□ -1.04
CSDE1-218ENST00000610726 PRAMEF22A3QJZ6 481 aa8.53□□□□□ -1.04
CSDE1-218ENST00000610726 PROSER3Q2NL68 480 aa8.53□□□□□ -1.04
CSDE1-218ENST00000610726 HOMER1Q86YM7 354 aa8.53□□□□□ -1.04
CSDE1-218ENST00000610726 CCDC191Q8NCU4 936 aa8.53□□□□□ -1.04
CSDE1-218ENST00000610726 TMOD2Q9NZR1 351 aa8.53□□□□□ -1.04
CSDE1-218ENST00000610726 ABCC4O15439 1325 aa8.53□□□□□ -1.04
CSDE1-218ENST00000610726 BCORL1Q5H9F3 1711 aa8.53□□□□□ -1.04
CSDE1-218ENST00000610726 EYA2O00167 538 aa8.53□□□□□ -1.04
CSDE1-218ENST00000610726 STX6O43752 255 aa8.53□□□□□ -1.04
CSDE1-218ENST00000610726 TTLL7Q6ZT98 887 aa8.53□□□□□ -1.04
CSDE1-218ENST00000610726 CTCFLQ8NI51 663 aaPredicted RBP8.53□□□□□ -1.04
CSDE1-218ENST00000610726 CDK5RAP3Q96JB5 506 aa8.53□□□□□ -1.04
CSDE1-218ENST00000610726 CDCA7Q9BWT1 371 aaPredicted RBP8.53□□□□□ -1.04
CSDE1-218ENST00000610726 NUP62CLQ9H1M0 184 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms