RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 NEXNQ0ZGT2 675 aa22.1■■□□□ 1.13
SHKBP1-212ENST00000596163 FLIIQ13045 1269 aa22.1■■□□□ 1.13
SHKBP1-212ENST00000596163 ZNF428Q96B54 188 aa22.1■■□□□ 1.13
SHKBP1-212ENST00000596163 NLRP3Q96P20 1036 aa22.1■■□□□ 1.13
SHKBP1-212ENST00000596163 METTL22Q9BUU2 404 aaPredicted RBP22.1■■□□□ 1.13
SHKBP1-212ENST00000596163 KIAA1551Q9HCM1 1747 aa22.1■■□□□ 1.13
SHKBP1-212ENST00000596163 MAP3K2Q9Y2U5 619 aa22.1■■□□□ 1.13
SHKBP1-212ENST00000596163 SH3TC1Q8TE82 1336 aa22.09■■□□□ 1.13
SHKBP1-212ENST00000596163 PI4KAP2A4QPH2 592 aa22.09■■□□□ 1.13
SHKBP1-212ENST00000596163 ATP5J2-PTCD1G3V325 749 aa22.09■■□□□ 1.13
SHKBP1-212ENST00000596163 ALDH1B1P30837 517 aa22.09■■□□□ 1.13
SHKBP1-212ENST00000596163 HNRNPUQ00839 825 aaKnown RBP eCLIP22.09■■□□□ 1.13
SHKBP1-212ENST00000596163 PI4KAP1Q8N8J0 262 aa22.09■■□□□ 1.13
SHKBP1-212ENST00000596163 CDCA7LQ96GN5 454 aa22.09■■□□□ 1.13
SHKBP1-212ENST00000596163 MYD88Q99836 296 aa22.09■■□□□ 1.13
SHKBP1-212ENST00000596163 RIC1Q4ADV7 1423 aa22.08■■□□□ 1.13
SHKBP1-212ENST00000596163 HSP90B1P14625 803 aaKnown RBP22.08■■□□□ 1.13
SHKBP1-212ENST00000596163 FKBP5Q13451 457 aaPredicted RBP22.08■■□□□ 1.13
SHKBP1-212ENST00000596163 G2E3Q7L622 706 aa22.08■■□□□ 1.13
SHKBP1-212ENST00000596163 TRMT2AQ8IZ69 625 aaKnown RBP22.08■■□□□ 1.13
SHKBP1-212ENST00000596163 CCDC191Q8NCU4 936 aa22.08■■□□□ 1.13
SHKBP1-212ENST00000596163 RPGRQ92834 1020 aaKnown RBP22.08■■□□□ 1.13
SHKBP1-212ENST00000596163 CT47B1P0C2W7 299 aaPredicted RBP22.06■■□□□ 1.12
SHKBP1-212ENST00000596163 CRY2Q49AN0 593 aa22.06■■□□□ 1.12
SHKBP1-212ENST00000596163 SOGA3Q5TF21 947 aa22.06■■□□□ 1.12
SHKBP1-212ENST00000596163 RBM17Q96I25 401 aaKnown RBP22.06■■□□□ 1.12
SHKBP1-212ENST00000596163 ABCC12Q96J65 1359 aa22.06■■□□□ 1.12
SHKBP1-212ENST00000596163 CWC25Q9NXE8 425 aaPredicted RBP22.05■■□□□ 1.12
SHKBP1-212ENST00000596163 HOXA10P31260 410 aaPredicted RBP22.04■■□□□ 1.12
SHKBP1-212ENST00000596163 PRPF40BQ6NWY9 871 aaKnown RBP22.04■■□□□ 1.12
SHKBP1-212ENST00000596163 ANKRD31Q8N7Z5 1873 aa22.03■■□□□ 1.12
SHKBP1-212ENST00000596163 ZBTB38Q8NAP3 1195 aaPredicted RBP22.03■■□□□ 1.12
SHKBP1-212ENST00000596163 DNAAF4Q8WXU2 420 aa22.03■■□□□ 1.12
SHKBP1-212ENST00000596163 FAM89AQ96GI7 184 aa22.03■■□□□ 1.12
SHKBP1-212ENST00000596163 ADCY9O60503 1353 aa22.02■■□□□ 1.12
SHKBP1-212ENST00000596163 C21orf2O43822 256 aa22.02■■□□□ 1.12
SHKBP1-212ENST00000596163 HCLS1P14317 486 aaPredicted RBP22.02■■□□□ 1.12
SHKBP1-212ENST00000596163 CRAMP1Q96RY5 1269 aa22.02■■□□□ 1.12
SHKBP1-212ENST00000596163 PCCAP05165 728 aaPredicted RBP22.01■■□□□ 1.11
SHKBP1-212ENST00000596163 ALDH1L2Q3SY69 923 aa22.01■■□□□ 1.11
SHKBP1-212ENST00000596163 ZNF219Q9P2Y4 722 aaPredicted RBP22.01■■□□□ 1.11
SHKBP1-212ENST00000596163 BRCA1P38398 1863 aaKnown RBP22■■□□□ 1.11
SHKBP1-212ENST00000596163 ANKRD36CQ5JPF3 1778 aa22■■□□□ 1.11
SHKBP1-212ENST00000596163 IRS4O14654 1257 aaPredicted RBP22■■□□□ 1.11
SHKBP1-212ENST00000596163 SYNE4Q8N205 404 aa22■■□□□ 1.11
SHKBP1-212ENST00000596163 TMX4Q9H1E5 349 aaPredicted RBP22■■□□□ 1.11
SHKBP1-212ENST00000596163 DLEC1Q9Y238 1755 aa21.99■■□□□ 1.11
SHKBP1-212ENST00000596163 IGKV5-2P06315 115 aa21.99■■□□□ 1.11
SHKBP1-212ENST00000596163 DDX46Q7L014 1031 aaKnown RBP21.99■■□□□ 1.11
SHKBP1-212ENST00000596163 MRPL50Q8N5N7 158 aaKnown RBP21.99■■□□□ 1.11
SHKBP1-212ENST00000596163 LINS1Q8NG48 757 aa21.99■■□□□ 1.11
SHKBP1-212ENST00000596163 NEURL1BA8MQ27 555 aa21.98■■□□□ 1.11
SHKBP1-212ENST00000596163 CCDC93Q567U6 631 aa21.98■■□□□ 1.11
SHKBP1-212ENST00000596163 RTL5Q5HYW3 569 aaPredicted RBP21.98■■□□□ 1.11
SHKBP1-212ENST00000596163 CC2D2BQ6DHV5 1058 aa21.98■■□□□ 1.11
SHKBP1-212ENST00000596163 C3orf67Q6ZVT6 689 aa21.98■■□□□ 1.11
SHKBP1-212ENST00000596163 SSH1Q8WYL5 1049 aa21.98■■□□□ 1.11
SHKBP1-212ENST00000596163 ARFGEF2Q9Y6D5 1785 aa21.97■■□□□ 1.11
SHKBP1-212ENST00000596163 ARFGEF1Q9Y6D6 1849 aa21.97■■□□□ 1.11
SHKBP1-212ENST00000596163 SF3B3Q15393 1217 aaKnown RBP21.97■■□□□ 1.11
SHKBP1-212ENST00000596163 GRIPAP1Q4V328 841 aa21.97■■□□□ 1.11
SHKBP1-212ENST00000596163 RTKN2Q8IZC4 609 aa21.97■■□□□ 1.11
SHKBP1-212ENST00000596163 C7orf43Q8WVR3 580 aa21.97■■□□□ 1.11
SHKBP1-212ENST00000596163 CHD4Q14839 1912 aa21.96■■□□□ 1.11
SHKBP1-212ENST00000596163 BBOX1O75936 387 aa21.96■■□□□ 1.11
SHKBP1-212ENST00000596163 CWF19L2Q2TBE0 894 aaKnown RBP21.96■■□□□ 1.11
SHKBP1-212ENST00000596163 C9orf131Q5VYM1 1079 aa21.96■■□□□ 1.11
SHKBP1-212ENST00000596163 SMC4Q9NTJ3 1288 aa21.96■■□□□ 1.11
SHKBP1-212ENST00000596163 PTPRCP08575 1304 aa21.96■■□□□ 1.11
SHKBP1-212ENST00000596163 ZBED9Q6R2W3 1325 aa21.96■■□□□ 1.11
SHKBP1-212ENST00000596163 CACNA1FO60840 1977 aa21.96■■□□□ 1.11
SHKBP1-212ENST00000596163 COL11A2P13942 1736 aaPredicted RBP21.95■■□□□ 1.1
SHKBP1-212ENST00000596163 PDE8AO60658 829 aa21.95■■□□□ 1.1
SHKBP1-212ENST00000596163 LMNB1P20700 586 aa21.95■■□□□ 1.1
SHKBP1-212ENST00000596163 CDHR2Q9BYE9 1310 aa21.95■■□□□ 1.1
SHKBP1-212ENST00000596163 F6X3S4 739 aa21.94■■□□□ 1.1
SHKBP1-212ENST00000596163 PPEF1O14829 653 aaPredicted RBP21.94■■□□□ 1.1
SHKBP1-212ENST00000596163 GCKRQ14397 625 aa21.94■■□□□ 1.1
SHKBP1-212ENST00000596163 TAOK3Q9H2K8 898 aa21.94■■□□□ 1.1
SHKBP1-212ENST00000596163 RNF181Q9P0P0 153 aa21.94■■□□□ 1.1
SHKBP1-212ENST00000596163 LTBP3Q9NS15 1303 aa21.94■■□□□ 1.1
SHKBP1-212ENST00000596163 H7C1W4 665 aa21.93■■□□□ 1.1
SHKBP1-212ENST00000596163 NFKBIEO00221 500 aa21.93■■□□□ 1.1
SHKBP1-212ENST00000596163 GRAPQ13588 217 aa21.93■■□□□ 1.1
SHKBP1-212ENST00000596163 BEND3Q5T5X7 828 aa21.93■■□□□ 1.1
SHKBP1-212ENST00000596163 TMC4Q7Z404 712 aa21.93■■□□□ 1.1
SHKBP1-212ENST00000596163 GRAPLQ8TC17 118 aaPredicted RBP21.93■■□□□ 1.1
SHKBP1-212ENST00000596163 GOLGB1Q14789 3259 aaKnown RBP21.93■■□□□ 1.1
SHKBP1-212ENST00000596163 TNRC6CQ9HCJ0 1690 aaKnown RBP21.92■■□□□ 1.1
SHKBP1-212ENST00000596163 ABCC4O15439 1325 aa21.92■■□□□ 1.1
SHKBP1-212ENST00000596163 RASSF7Q02833 373 aa21.92■■□□□ 1.1
SHKBP1-212ENST00000596163 CCDC152Q4G0S7 254 aa21.92■■□□□ 1.1
SHKBP1-212ENST00000596163 SLC4A10Q6U841 1118 aa21.92■■□□□ 1.1
SHKBP1-212ENST00000596163 ZNF784Q8NCA9 323 aaPredicted RBP21.92■■□□□ 1.1
SHKBP1-212ENST00000596163 BCL2L13Q9BXK5 485 aa21.92■■□□□ 1.1
SHKBP1-212ENST00000596163 ALDH1L1O75891 902 aa21.91■■□□□ 1.1
SHKBP1-212ENST00000596163 JARID2Q92833 1246 aaPredicted RBP21.91■■□□□ 1.1
SHKBP1-212ENST00000596163 SRCIN1Q9C0H9 1055 aa21.91■■□□□ 1.1
SHKBP1-212ENST00000596163 UTRNP46939 3433 aa21.91■■□□□ 1.1
SHKBP1-212ENST00000596163 BRPF1P55201 1214 aaPredicted RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms