RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 NRXN2Q9P2S2 1712 aa12.28□□□□□ -0.44
DDX39A-220ENST00000593008 ATP5J2-PTCD1G3V325 749 aa12.28□□□□□ -0.44
DDX39A-220ENST00000593008 CENPBP07199 599 aaPredicted RBP12.28□□□□□ -0.44
DDX39A-220ENST00000593008 PDE6BP35913 854 aa12.28□□□□□ -0.44
DDX39A-220ENST00000593008 JARID2Q92833 1246 aaPredicted RBP12.28□□□□□ -0.44
DDX39A-220ENST00000593008 MYD88Q99836 296 aa12.28□□□□□ -0.44
DDX39A-220ENST00000593008 ABCC4O15439 1325 aa12.28□□□□□ -0.44
DDX39A-220ENST00000593008 KIF16BQ96L93 1317 aa12.28□□□□□ -0.44
DDX39A-220ENST00000593008 IGKV5-2P06315 115 aa12.27□□□□□ -0.45
DDX39A-220ENST00000593008 GTF2E1P29083 439 aaPredicted RBP12.27□□□□□ -0.45
DDX39A-220ENST00000593008 BRPF1P55201 1214 aaPredicted RBP12.27□□□□□ -0.45
DDX39A-220ENST00000593008 CWF19L2Q2TBE0 894 aaKnown RBP12.27□□□□□ -0.45
DDX39A-220ENST00000593008 ZKSCAN2Q63HK3 967 aa12.27□□□□□ -0.45
DDX39A-220ENST00000593008 SLC4A10Q6U841 1118 aa12.27□□□□□ -0.45
DDX39A-220ENST00000593008 KSR2Q6VAB6 950 aa12.27□□□□□ -0.45
DDX39A-220ENST00000593008 ATF7IPQ6VMQ6 1270 aa12.27□□□□□ -0.45
DDX39A-220ENST00000593008 TPTE2Q6XPS3 522 aa12.27□□□□□ -0.45
DDX39A-220ENST00000593008 NUTM1Q86Y26 1132 aa12.27□□□□□ -0.45
DDX39A-220ENST00000593008 TMEM57Q8N5G2 664 aa12.27□□□□□ -0.45
DDX39A-220ENST00000593008 ZNF219Q9P2Y4 722 aaPredicted RBP12.27□□□□□ -0.45
DDX39A-220ENST00000593008 RNF123Q5XPI4 1314 aa12.27□□□□□ -0.45
DDX39A-220ENST00000593008 UBN2Q6ZU65 1347 aa12.27□□□□□ -0.45
DDX39A-220ENST00000593008 ANKRD36CQ5JPF3 1778 aa12.27□□□□□ -0.45
DDX39A-220ENST00000593008 NUP98P52948 1817 aa12.26□□□□□ -0.45
DDX39A-220ENST00000593008 RGL2O15211 777 aa12.26□□□□□ -0.45
DDX39A-220ENST00000593008 SUSD4Q5VX71 490 aa12.26□□□□□ -0.45
DDX39A-220ENST00000593008 GIGYF2Q6Y7W6 1299 aaKnown RBP12.26□□□□□ -0.45
DDX39A-220ENST00000593008 ANKRD13DQ6ZTN6 518 aa12.26□□□□□ -0.45
DDX39A-220ENST00000593008 RIC3Q7Z5B4 369 aa12.26□□□□□ -0.45
DDX39A-220ENST00000593008 TTLL6Q8N841 843 aa12.26□□□□□ -0.45
DDX39A-220ENST00000593008 PLBD2Q8NHP8 589 aa12.26□□□□□ -0.45
DDX39A-220ENST00000593008 ZNF526Q8TF50 670 aaPredicted RBP12.26□□□□□ -0.45
DDX39A-220ENST00000593008 DNAAF4Q8WXU2 420 aa12.26□□□□□ -0.45
DDX39A-220ENST00000593008 PTPRCP08575 1304 aa12.26□□□□□ -0.45
DDX39A-220ENST00000593008 CACNA1FO60840 1977 aa12.25□□□□□ -0.45
DDX39A-220ENST00000593008 ERFEQ4G0M1 354 aa12.25□□□□□ -0.45
DDX39A-220ENST00000593008 ZNF34Q8IZ26 560 aa12.25□□□□□ -0.45
DDX39A-220ENST00000593008 ATP10DQ9P241 1426 aa12.25□□□□□ -0.45
DDX39A-220ENST00000593008 CHD4Q14839 1912 aa12.25□□□□□ -0.45
DDX39A-220ENST00000593008 SRGNP10124 158 aa12.24□□□□□ -0.45
DDX39A-220ENST00000593008 RASSF7Q02833 373 aa12.24□□□□□ -0.45
DDX39A-220ENST00000593008 RTL5Q5HYW3 569 aaPredicted RBP12.24□□□□□ -0.45
DDX39A-220ENST00000593008 BEND3Q5T5X7 828 aa12.24□□□□□ -0.45
DDX39A-220ENST00000593008 SYNE4Q8N205 404 aa12.24□□□□□ -0.45
DDX39A-220ENST00000593008 ABCC12Q96J65 1359 aa12.24□□□□□ -0.45
DDX39A-220ENST00000593008 CRBNQ96SW2 442 aa12.24□□□□□ -0.45
DDX39A-220ENST00000593008 METTL22Q9BUU2 404 aaPredicted RBP12.24□□□□□ -0.45
DDX39A-220ENST00000593008 API5Q9BZZ5 524 aaKnown RBP12.24□□□□□ -0.45
DDX39A-220ENST00000593008 NYXQ9GZU5 481 aa12.24□□□□□ -0.45
DDX39A-220ENST00000593008 COG6Q9Y2V7 657 aa12.24□□□□□ -0.45
DDX39A-220ENST00000593008 BRCA1P38398 1863 aaKnown RBP12.23□□□□□ -0.45
DDX39A-220ENST00000593008 ANKRD31Q8N7Z5 1873 aa12.23□□□□□ -0.45
DDX39A-220ENST00000593008 TNRC6CQ9HCJ0 1690 aaKnown RBP12.23□□□□□ -0.45
DDX39A-220ENST00000593008 C21orf2O43822 256 aa12.23□□□□□ -0.45
DDX39A-220ENST00000593008 DDX58O95786 925 aaKnown RBP12.23□□□□□ -0.45
DDX39A-220ENST00000593008 DZIP1LQ8IYY4 767 aaKnown RBP12.23□□□□□ -0.45
DDX39A-220ENST00000593008 MASTLQ96GX5 879 aa12.23□□□□□ -0.45
DDX39A-220ENST00000593008 ISCA1Q9BUE6 129 aa12.23□□□□□ -0.45
DDX39A-220ENST00000593008 PDZRN3Q9UPQ7 1066 aa12.23□□□□□ -0.45
DDX39A-220ENST00000593008 NEURL1BA8MQ27 555 aa12.22□□□□□ -0.45
DDX39A-220ENST00000593008 NTSR2O95665 410 aa12.22□□□□□ -0.45
DDX39A-220ENST00000593008 TCIRG1Q13488 830 aa12.22□□□□□ -0.45
DDX39A-220ENST00000593008 C9orf131Q5VYM1 1079 aa12.22□□□□□ -0.45
DDX39A-220ENST00000593008 STYK1Q6J9G0 422 aa12.22□□□□□ -0.45
DDX39A-220ENST00000593008 PRPF40BQ6NWY9 871 aaKnown RBP12.22□□□□□ -0.45
DDX39A-220ENST00000593008 NLRP10Q86W26 655 aa12.22□□□□□ -0.45
DDX39A-220ENST00000593008 FTSJ3Q8IY81 847 aaKnown RBP12.22□□□□□ -0.45
DDX39A-220ENST00000593008 ARHGAP45Q92619 1136 aa12.22□□□□□ -0.45
DDX39A-220ENST00000593008 CNKSR1Q969H4 720 aa12.22□□□□□ -0.45
DDX39A-220ENST00000593008 UTP14AQ9BVJ6 771 aaKnown RBP12.22□□□□□ -0.45
DDX39A-220ENST00000593008 COL11A2P13942 1736 aaPredicted RBP12.22□□□□□ -0.45
DDX39A-220ENST00000593008 NPR1P16066 1061 aa12.21□□□□□ -0.45
DDX39A-220ENST00000593008 PARP10Q53GL7 1025 aa12.21□□□□□ -0.45
DDX39A-220ENST00000593008 C3orf67Q6ZVT6 689 aa12.21□□□□□ -0.45
DDX39A-220ENST00000593008 PPP1R42Q7Z4L9 355 aa12.21□□□□□ -0.45
DDX39A-220ENST00000593008 ITPRIPQ8IWB1 547 aa12.21□□□□□ -0.45
DDX39A-220ENST00000593008 MEIS3Q99687 375 aa12.21□□□□□ -0.45
DDX39A-220ENST00000593008 C1orf115Q9H7X2 142 aa12.21□□□□□ -0.45
DDX39A-220ENST00000593008 RNF181Q9P0P0 153 aa12.21□□□□□ -0.45
DDX39A-220ENST00000593008 COL4A1P02462 1669 aa12.2□□□□□ -0.46
DDX39A-220ENST00000593008 KLRG2A4D1S0 409 aaPredicted RBP12.2□□□□□ -0.46
DDX39A-220ENST00000593008 IPO8O15397 1037 aaKnown RBP12.2□□□□□ -0.46
DDX39A-220ENST00000593008 HSP90AB3PQ58FF7 597 aa12.2□□□□□ -0.46
DDX39A-220ENST00000593008 OLFM4Q6UX06 510 aa12.2□□□□□ -0.46
DDX39A-220ENST00000593008 SRCIN1Q9C0H9 1055 aa12.2□□□□□ -0.46
DDX39A-220ENST00000593008 IBTKQ9P2D0 1353 aaPredicted RBP12.19□□□□□ -0.46
DDX39A-220ENST00000593008 NFKBIEO00221 500 aa12.19□□□□□ -0.46
DDX39A-220ENST00000593008 NBPF7P0C2Y1 421 aaPredicted RBP12.19□□□□□ -0.46
DDX39A-220ENST00000593008 HCLS1P14317 486 aaPredicted RBP12.19□□□□□ -0.46
DDX39A-220ENST00000593008 PRELPP51888 382 aa12.19□□□□□ -0.46
DDX39A-220ENST00000593008 GCKRQ14397 625 aa12.19□□□□□ -0.46
DDX39A-220ENST00000593008 INTS3Q68E01 1043 aaKnown RBP12.19□□□□□ -0.46
DDX39A-220ENST00000593008 LINS1Q8NG48 757 aa12.19□□□□□ -0.46
DDX39A-220ENST00000593008 EXOC6Q8TAG9 804 aa12.19□□□□□ -0.46
DDX39A-220ENST00000593008 RPGRQ92834 1020 aaKnown RBP12.19□□□□□ -0.46
DDX39A-220ENST00000593008 FAM89AQ96GI7 184 aa12.19□□□□□ -0.46
DDX39A-220ENST00000593008 TRMT112Q9UI30 125 aaKnown RBP12.19□□□□□ -0.46
DDX39A-220ENST00000593008 DLEC1Q9Y238 1755 aa12.19□□□□□ -0.46
DDX39A-220ENST00000593008 ARFGEF1Q9Y6D6 1849 aa12.18□□□□□ -0.46
DDX39A-220ENST00000593008 DDX60Q8IY21 1712 aaKnown RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms