RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 SLC15A2Q16348 729 aa20.28■□□□□ 0.84
SS18-226ENST00000585241 PARP10Q53GL7 1025 aa20.28■□□□□ 0.84
SS18-226ENST00000585241 C9orf78Q9NZ63 289 aaPredicted RBP20.28■□□□□ 0.84
SS18-226ENST00000585241 TFCP2L1Q9NZI6 479 aa20.28■□□□□ 0.84
SS18-226ENST00000585241 SRP68Q9UHB9 627 aaKnown RBP20.28■□□□□ 0.84
SS18-226ENST00000585241 GNAI2P04899 355 aa20.27■□□□□ 0.84
SS18-226ENST00000585241 HDAC5Q9UQL6 1122 aa20.27■□□□□ 0.84
SS18-226ENST00000585241 PNPLA7Q6ZV29 1317 aa20.27■□□□□ 0.83
SS18-226ENST00000585241 STK32BQ9NY57 414 aa20.26■□□□□ 0.83
SS18-226ENST00000585241 PCCAP05165 728 aaPredicted RBP20.25■□□□□ 0.83
SS18-226ENST00000585241 GYS1P13807 737 aa20.25■□□□□ 0.83
SS18-226ENST00000585241 GPTP24298 496 aa20.25■□□□□ 0.83
SS18-226ENST00000585241 COL23A1Q86Y22 540 aaPredicted RBP20.25■□□□□ 0.83
SS18-226ENST00000585241 C1orf115Q9H7X2 142 aa20.25■□□□□ 0.83
SS18-226ENST00000585241 CDHR2Q9BYE9 1310 aa20.25■□□□□ 0.83
SS18-226ENST00000585241 CEP85Q6P2H3 762 aa20.24■□□□□ 0.83
SS18-226ENST00000585241 RPAP2Q8IXW5 612 aaPredicted RBP20.24■□□□□ 0.83
SS18-226ENST00000585241 ANKRD44Q8N8A2 993 aa20.24■□□□□ 0.83
SS18-226ENST00000585241 ZBTB38Q8NAP3 1195 aaPredicted RBP20.24■□□□□ 0.83
SS18-226ENST00000585241 NIP7Q9Y221 180 aaKnown RBP eCLIP20.24■□□□□ 0.83
SS18-226ENST00000585241 LRRFIP2Q9Y608 721 aaKnown RBP20.24■□□□□ 0.83
SS18-226ENST00000585241 MTX1Q13505 466 aa20.23■□□□□ 0.83
SS18-226ENST00000585241 HDAC1Q13547 482 aaPredicted RBP20.23■□□□□ 0.83
SS18-226ENST00000585241 TBC1D9BQ66K14 1250 aa20.23■□□□□ 0.83
SS18-226ENST00000585241 UBE3BQ7Z3V4 1068 aa20.23■□□□□ 0.83
SS18-226ENST00000585241 KAZALD1Q96I82 304 aa20.23■□□□□ 0.83
SS18-226ENST00000585241 SUCLG2Q96I99 432 aa20.23■□□□□ 0.83
SS18-226ENST00000585241 CCDC136Q96JN2 1154 aa20.23■□□□□ 0.83
SS18-226ENST00000585241 NTSR2O95665 410 aa20.22■□□□□ 0.83
SS18-226ENST00000585241 SUSD4Q5VX71 490 aa20.22■□□□□ 0.83
SS18-226ENST00000585241 SIRT2Q8IXJ6 389 aa20.22■□□□□ 0.83
SS18-226ENST00000585241 PLA2G12BQ9BX93 195 aa20.22■□□□□ 0.83
SS18-226ENST00000585241 B4GALNT3Q6L9W6 998 aa20.21■□□□□ 0.83
SS18-226ENST00000585241 ILDR2Q71H61 639 aa20.21■□□□□ 0.83
SS18-226ENST00000585241 PPP1R42Q7Z4L9 355 aa20.21■□□□□ 0.83
SS18-226ENST00000585241 KDM2BQ8NHM5 1336 aa20.21■□□□□ 0.83
SS18-226ENST00000585241 RABL6Q3YEC7 729 aaPredicted RBP20.2■□□□□ 0.82
SS18-226ENST00000585241 UTP14AQ9BVJ6 771 aaKnown RBP20.2■□□□□ 0.82
SS18-226ENST00000585241 LAMB2P55268 1798 aa20.2■□□□□ 0.82
SS18-226ENST00000585241 TM4SF1P30408 202 aa20.19■□□□□ 0.82
SS18-226ENST00000585241 ATP8B2P98198 1209 aa20.19■□□□□ 0.82
SS18-226ENST00000585241 NFIXQ14938 502 aa20.19■□□□□ 0.82
SS18-226ENST00000585241 SETDB2Q96T68 719 aa20.19■□□□□ 0.82
SS18-226ENST00000585241 TRMT112Q9UI30 125 aaKnown RBP20.19■□□□□ 0.82
SS18-226ENST00000585241 SH3TC1Q8TE82 1336 aa20.19■□□□□ 0.82
SS18-226ENST00000585241 CARMIL3Q8ND23 1372 aa20.19■□□□□ 0.82
SS18-226ENST00000585241 EPHA10Q5JZY3 1008 aa20.18■□□□□ 0.82
SS18-226ENST00000585241 FAM89AQ96GI7 184 aa20.18■□□□□ 0.82
SS18-226ENST00000585241 RWDD1Q9H446 243 aaPredicted RBP20.18■□□□□ 0.82
SS18-226ENST00000585241 IGHDP01880 384 aa20.17■□□□□ 0.82
SS18-226ENST00000585241 FOXO4P98177 505 aa20.17■□□□□ 0.82
SS18-226ENST00000585241 POLA2Q14181 598 aa20.17■□□□□ 0.82
SS18-226ENST00000585241 NLGN1Q8N2Q7 840 aa20.17■□□□□ 0.82
SS18-226ENST00000585241 SSH3Q8TE77 659 aa20.17■□□□□ 0.82
SS18-226ENST00000585241 JARID2Q92833 1246 aaPredicted RBP20.17■□□□□ 0.82
SS18-226ENST00000585241 NYXQ9GZU5 481 aa20.17■□□□□ 0.82
SS18-226ENST00000585241 BICC1Q9H694 974 aaKnown RBP20.17■□□□□ 0.82
SS18-226ENST00000585241 HMMRO75330 724 aa20.16■□□□□ 0.82
SS18-226ENST00000585241 CENPQQ7L2Z9 268 aaPredicted RBP20.16■□□□□ 0.82
SS18-226ENST00000585241 DDX60Q8IY21 1712 aaKnown RBP20.16■□□□□ 0.82
SS18-226ENST00000585241 PNMA6EA0A0J9YXQ4 647 aa20.15■□□□□ 0.82
SS18-226ENST00000585241 IRS4O14654 1257 aaPredicted RBP20.15■□□□□ 0.82
SS18-226ENST00000585241 HSP90B1P14625 803 aaKnown RBP20.15■□□□□ 0.82
SS18-226ENST00000585241 SLC10A5Q5PT55 438 aa20.15■□□□□ 0.82
SS18-226ENST00000585241 BICDL1Q6ZP65 573 aa20.15■□□□□ 0.82
SS18-226ENST00000585241 RIC1Q4ADV7 1423 aa20.15■□□□□ 0.82
SS18-226ENST00000585241 NRXN2Q9P2S2 1712 aa20.15■□□□□ 0.82
SS18-226ENST00000585241 MYH3P11055 1940 aa20.14■□□□□ 0.81
SS18-226ENST00000585241 CSF1RP07333 972 aa20.14■□□□□ 0.81
SS18-226ENST00000585241 SYNE4Q8N205 404 aa20.14■□□□□ 0.81
SS18-226ENST00000585241 POLRMTO00411 1230 aaKnown RBP20.13■□□□□ 0.81
SS18-226ENST00000585241 PDE8AO60658 829 aa20.13■□□□□ 0.81
SS18-226ENST00000585241 DDR1Q08345 913 aa20.13■□□□□ 0.81
SS18-226ENST00000585241 RTL5Q5HYW3 569 aaPredicted RBP20.13■□□□□ 0.81
SS18-226ENST00000585241 TPTE2Q6XPS3 522 aa20.13■□□□□ 0.81
SS18-226ENST00000585241 NBPF5PQ86XG9 351 aaPredicted RBP20.13■□□□□ 0.81
SS18-226ENST00000585241 SMC5Q8IY18 1101 aa20.13■□□□□ 0.81
SS18-226ENST00000585241 SLC16A10Q8TF71 515 aa20.13■□□□□ 0.81
SS18-226ENST00000585241 ABCC12Q96J65 1359 aa20.12■□□□□ 0.81
SS18-226ENST00000585241 MSH5O43196 834 aa20.12■□□□□ 0.81
SS18-226ENST00000585241 SRGAP3O43295 1099 aa20.12■□□□□ 0.81
SS18-226ENST00000585241 DCTPP1Q9H773 170 aa20.12■□□□□ 0.81
SS18-226ENST00000585241 CASZ1Q86V15 1759 aa20.12■□□□□ 0.81
SS18-226ENST00000585241 FAM177BA6PVY3 158 aa20.11■□□□□ 0.81
SS18-226ENST00000585241 RFX5P48382 616 aaPredicted RBP20.11■□□□□ 0.81
SS18-226ENST00000585241 CTSWP56202 376 aa20.11■□□□□ 0.81
SS18-226ENST00000585241 ERFEQ4G0M1 354 aa20.11■□□□□ 0.81
SS18-226ENST00000585241 LMBR1LQ6UX01 489 aa20.11■□□□□ 0.81
SS18-226ENST00000585241 NUTM1Q86Y26 1132 aa20.11■□□□□ 0.81
SS18-226ENST00000585241 GCC1Q96CN9 775 aa20.11■□□□□ 0.81
SS18-226ENST00000585241 RTL9Q8NET4 1388 aa20.1■□□□□ 0.81
SS18-226ENST00000585241 SERPINB2P05120 415 aa20.1■□□□□ 0.81
SS18-226ENST00000585241 TTLL11Q8NHH1 800 aa20.1■□□□□ 0.81
SS18-226ENST00000585241 NOP58Q9Y2X3 529 aaKnown RBP20.1■□□□□ 0.81
SS18-226ENST00000585241 PRR5LQ6MZQ0 368 aa20.09■□□□□ 0.81
SS18-226ENST00000585241 CNBD1Q8NA66 436 aa20.09■□□□□ 0.81
SS18-226ENST00000585241 HCLS1P14317 486 aaPredicted RBP20.08■□□□□ 0.81
SS18-226ENST00000585241 SF3B3Q15393 1217 aaKnown RBP20.08■□□□□ 0.81
SS18-226ENST00000585241 PDGFDQ9GZP0 370 aaPredicted RBP20.08■□□□□ 0.81
SS18-226ENST00000585241 COPRSQ9NQ92 184 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms