RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 PLA2G12BQ9BX93 195 aa19.07■□□□□ 0.64
SS18-215ENST00000580642 LRRFIP2Q9Y608 721 aaKnown RBP19.07■□□□□ 0.64
SS18-215ENST00000580642 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.06■□□□□ 0.64
SS18-215ENST00000580642 IGHDP01880 384 aa19.06■□□□□ 0.64
SS18-215ENST00000580642 SIRT2Q8IXJ6 389 aa19.06■□□□□ 0.64
SS18-215ENST00000580642 C1orf115Q9H7X2 142 aa19.06■□□□□ 0.64
SS18-215ENST00000580642 RABL6Q3YEC7 729 aaPredicted RBP19.05■□□□□ 0.64
SS18-215ENST00000580642 SSH3Q8TE77 659 aa19.05■□□□□ 0.64
SS18-215ENST00000580642 BCORQ6W2J9 1755 aa19.05■□□□□ 0.64
SS18-215ENST00000580642 SCN7AQ01118 1682 aa19.05■□□□□ 0.64
SS18-215ENST00000580642 USPL1Q5W0Q7 1092 aa19.04■□□□□ 0.64
SS18-215ENST00000580642 UBE3BQ7Z3V4 1068 aa19.04■□□□□ 0.64
SS18-215ENST00000580642 UTP14AQ9BVJ6 771 aaKnown RBP19.04■□□□□ 0.64
SS18-215ENST00000580642 DCTPP1Q9H773 170 aa19.04■□□□□ 0.64
SS18-215ENST00000580642 TFCP2L1Q9NZI6 479 aa19.04■□□□□ 0.64
SS18-215ENST00000580642 NIP7Q9Y221 180 aaKnown RBP eCLIP19.04■□□□□ 0.64
SS18-215ENST00000580642 ANKRD36CQ5JPF3 1778 aa19.04■□□□□ 0.64
SS18-215ENST00000580642 NUP98P52948 1817 aa19.03■□□□□ 0.64
SS18-215ENST00000580642 EN1Q05925 392 aaPredicted RBP19.03■□□□□ 0.64
SS18-215ENST00000580642 POLA2Q14181 598 aa19.03■□□□□ 0.64
SS18-215ENST00000580642 KAZALD1Q96I82 304 aa19.03■□□□□ 0.64
SS18-215ENST00000580642 SUCLG2Q96I99 432 aa19.03■□□□□ 0.64
SS18-215ENST00000580642 NYXQ9GZU5 481 aa19.03■□□□□ 0.64
SS18-215ENST00000580642 BCL2L12Q9HB09 334 aa19.03■□□□□ 0.64
SS18-215ENST00000580642 UBR3Q6ZT12 1888 aa19.03■□□□□ 0.64
SS18-215ENST00000580642 UBN2Q6ZU65 1347 aa19.02■□□□□ 0.64
SS18-215ENST00000580642 SH3TC1Q8TE82 1336 aa19.02■□□□□ 0.64
SS18-215ENST00000580642 GPTP24298 496 aa19.02■□□□□ 0.64
SS18-215ENST00000580642 EZH2Q15910 746 aaKnown RBP19.02■□□□□ 0.64
SS18-215ENST00000580642 HSP90AB4PQ58FF6 505 aa19.02■□□□□ 0.64
SS18-215ENST00000580642 SETDB2Q96T68 719 aa19.02■□□□□ 0.64
SS18-215ENST00000580642 TRMT112Q9UI30 125 aaKnown RBP19.02■□□□□ 0.64
SS18-215ENST00000580642 SRGAP3O43295 1099 aa19.01■□□□□ 0.63
SS18-215ENST00000580642 BICC1Q9H694 974 aaKnown RBP19.01■□□□□ 0.63
SS18-215ENST00000580642 STK32BQ9NY57 414 aa19.01■□□□□ 0.63
SS18-215ENST00000580642 AFDNP55196 1824 aaKnown RBP19.01■□□□□ 0.63
SS18-215ENST00000580642 PHF14O94880 888 aa19■□□□□ 0.63
SS18-215ENST00000580642 SLC15A2Q16348 729 aa19■□□□□ 0.63
SS18-215ENST00000580642 ZNF827Q17R98 1081 aa19■□□□□ 0.63
SS18-215ENST00000580642 SUSD4Q5VX71 490 aa19■□□□□ 0.63
SS18-215ENST00000580642 AMIGO3Q86WK7 504 aa19■□□□□ 0.63
SS18-215ENST00000580642 PELP1Q8IZL8 1130 aaKnown RBP19■□□□□ 0.63
SS18-215ENST00000580642 NLGN1Q8N2Q7 840 aa19■□□□□ 0.63
SS18-215ENST00000580642 RAB11FIP3O75154 756 aa18.99■□□□□ 0.63
SS18-215ENST00000580642 NTSR2O95665 410 aa18.99■□□□□ 0.63
SS18-215ENST00000580642 FOXO4P98177 505 aa18.99■□□□□ 0.63
SS18-215ENST00000580642 SRP68Q9UHB9 627 aaKnown RBP18.99■□□□□ 0.63
SS18-215ENST00000580642 NOP58Q9Y2X3 529 aaKnown RBP18.99■□□□□ 0.63
SS18-215ENST00000580642 CARMIL3Q8ND23 1372 aa18.98■□□□□ 0.63
SS18-215ENST00000580642 PNMA6EA0A0J9YXQ4 647 aa18.98■□□□□ 0.63
SS18-215ENST00000580642 PDE8AO60658 829 aa18.98■□□□□ 0.63
SS18-215ENST00000580642 CSF1RP07333 972 aa18.98■□□□□ 0.63
SS18-215ENST00000580642 GYS1P13807 737 aa18.98■□□□□ 0.63
SS18-215ENST00000580642 SLC10A5Q5PT55 438 aa18.98■□□□□ 0.63
SS18-215ENST00000580642 TBC1D9BQ66K14 1250 aa18.98■□□□□ 0.63
SS18-215ENST00000580642 TPTE2Q6XPS3 522 aa18.98■□□□□ 0.63
SS18-215ENST00000580642 FAM89AQ96GI7 184 aa18.98■□□□□ 0.63
SS18-215ENST00000580642 C4AP0C0L4 1744 aa18.97■□□□□ 0.63
SS18-215ENST00000580642 IRS4O14654 1257 aaPredicted RBP18.97■□□□□ 0.63
SS18-215ENST00000580642 NUCB1Q02818 461 aa18.97■□□□□ 0.63
SS18-215ENST00000580642 FBXO3Q9UK99 471 aa18.97■□□□□ 0.63
SS18-215ENST00000580642 ERC1Q8IUD2 1116 aa18.96■□□□□ 0.63
SS18-215ENST00000580642 COPRSQ9NQ92 184 aa18.96■□□□□ 0.63
SS18-215ENST00000580642 RTL9Q8NET4 1388 aa18.95■□□□□ 0.62
SS18-215ENST00000580642 RIC1Q4ADV7 1423 aa18.95■□□□□ 0.62
SS18-215ENST00000580642 TM4SF1P30408 202 aa18.95■□□□□ 0.62
SS18-215ENST00000580642 EPHA10Q5JZY3 1008 aa18.95■□□□□ 0.62
SS18-215ENST00000580642 LMBR1LQ6UX01 489 aa18.95■□□□□ 0.62
SS18-215ENST00000580642 DEFB132Q7Z7B7 95 aa18.95■□□□□ 0.62
SS18-215ENST00000580642 COL23A1Q86Y22 540 aaPredicted RBP18.95■□□□□ 0.62
SS18-215ENST00000580642 ZBTB47Q9UFB7 747 aaPredicted RBP18.95■□□□□ 0.62
SS18-215ENST00000580642 PNPLA7Q6ZV29 1317 aa18.95■□□□□ 0.62
SS18-215ENST00000580642 QSER1Q2KHR3 1735 aa18.94■□□□□ 0.62
SS18-215ENST00000580642 CTSWP56202 376 aa18.94■□□□□ 0.62
SS18-215ENST00000580642 NFIXQ14938 502 aa18.94■□□□□ 0.62
SS18-215ENST00000580642 NBPF5PQ86XG9 351 aaPredicted RBP18.94■□□□□ 0.62
SS18-215ENST00000580642 COL24A1Q17RW2 1714 aa18.94■□□□□ 0.62
SS18-215ENST00000580642 SMIM5Q71RC9 77 aa18.93■□□□□ 0.62
SS18-215ENST00000580642 CHD1LQ86WJ1 897 aa18.93■□□□□ 0.62
SS18-215ENST00000580642 SLC16A10Q8TF71 515 aa18.93■□□□□ 0.62
SS18-215ENST00000580642 SURF6O75683 361 aaKnown RBP18.92■□□□□ 0.62
SS18-215ENST00000580642 GTF2E1P29083 439 aaPredicted RBP18.92■□□□□ 0.62
SS18-215ENST00000580642 RFX5P48382 616 aaPredicted RBP18.92■□□□□ 0.62
SS18-215ENST00000580642 CCDC57Q2TAC2 916 aa18.92■□□□□ 0.62
SS18-215ENST00000580642 TTLL11Q8NHH1 800 aa18.92■□□□□ 0.62
SS18-215ENST00000580642 JARID2Q92833 1246 aaPredicted RBP18.92■□□□□ 0.62
SS18-215ENST00000580642 UPF1Q92900 1129 aaKnown RBP eCLIP18.92■□□□□ 0.62
SS18-215ENST00000580642 ANO8Q9HCE9 1232 aaPredicted RBP18.92■□□□□ 0.62
SS18-215ENST00000580642 PDZRN3Q9UPQ7 1066 aa18.92■□□□□ 0.62
SS18-215ENST00000580642 CIAO1O76071 339 aa18.91■□□□□ 0.62
SS18-215ENST00000580642 IFIT5Q13325 482 aaKnown RBP18.91■□□□□ 0.62
SS18-215ENST00000580642 SF3B3Q15393 1217 aaKnown RBP18.91■□□□□ 0.62
SS18-215ENST00000580642 CCDC152Q4G0S7 254 aa18.91■□□□□ 0.62
SS18-215ENST00000580642 KIF1BPQ96EK5 621 aa18.91■□□□□ 0.62
SS18-215ENST00000580642 LRRCC1Q9C099 1032 aa18.91■□□□□ 0.62
SS18-215ENST00000580642 PTPN12Q05209 780 aaKnown RBP18.9■□□□□ 0.62
SS18-215ENST00000580642 G3BP1Q13283 466 aaKnown RBP eCLIP18.9■□□□□ 0.62
SS18-215ENST00000580642 RTL5Q5HYW3 569 aaPredicted RBP18.9■□□□□ 0.62
SS18-215ENST00000580642 ANKRD45Q5TZF3 282 aa18.9■□□□□ 0.62
SS18-215ENST00000580642 BICDL1Q6ZP65 573 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms