RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 SMIM5Q71RC9 77 aa13.48□□□□□ -0.25
SS18-213ENST00000579640 NLRP10Q86W26 655 aa13.48□□□□□ -0.25
SS18-213ENST00000579640 BCL2L12Q9HB09 334 aa13.48□□□□□ -0.25
SS18-213ENST00000579640 SRP68Q9UHB9 627 aaKnown RBP13.48□□□□□ -0.25
SS18-213ENST00000579640 ANO8Q9HCE9 1232 aaPredicted RBP13.48□□□□□ -0.25
SS18-213ENST00000579640 NIP7Q9Y221 180 aaKnown RBP eCLIP13.48□□□□□ -0.25
SS18-213ENST00000579640 PNPLA7Q6ZV29 1317 aa13.47□□□□□ -0.25
SS18-213ENST00000579640 H7C1W4 665 aa13.47□□□□□ -0.25
SS18-213ENST00000579640 NBPF7P0C2Y1 421 aaPredicted RBP13.47□□□□□ -0.25
SS18-213ENST00000579640 GPTP24298 496 aa13.47□□□□□ -0.25
SS18-213ENST00000579640 PPP1R42Q7Z4L9 355 aa13.47□□□□□ -0.25
SS18-213ENST00000579640 PCCAP05165 728 aaPredicted RBP13.46□□□□□ -0.25
SS18-213ENST00000579640 COL23A1Q86Y22 540 aaPredicted RBP13.46□□□□□ -0.25
SS18-213ENST00000579640 ZBTB38Q8NAP3 1195 aaPredicted RBP13.46□□□□□ -0.25
SS18-213ENST00000579640 UBN2Q6ZU65 1347 aa13.46□□□□□ -0.25
SS18-213ENST00000579640 GYS1P13807 737 aa13.46□□□□□ -0.26
SS18-213ENST00000579640 RPAP2Q8IXW5 612 aaPredicted RBP13.46□□□□□ -0.26
SS18-213ENST00000579640 SETDB2Q96T68 719 aa13.46□□□□□ -0.26
SS18-213ENST00000579640 CDHR2Q9BYE9 1310 aa13.45□□□□□ -0.26
SS18-213ENST00000579640 COL24A1Q17RW2 1714 aa13.45□□□□□ -0.26
SS18-213ENST00000579640 CASP7P55210 303 aa13.45□□□□□ -0.26
SS18-213ENST00000579640 TBC1D9BQ66K14 1250 aa13.45□□□□□ -0.26
SS18-213ENST00000579640 UBE3BQ7Z3V4 1068 aa13.45□□□□□ -0.26
SS18-213ENST00000579640 NLGN1Q8N2Q7 840 aa13.45□□□□□ -0.26
SS18-213ENST00000579640 CCDC136Q96JN2 1154 aa13.45□□□□□ -0.26
SS18-213ENST00000579640 UTP14AQ9BVJ6 771 aaKnown RBP13.45□□□□□ -0.26
SS18-213ENST00000579640 PCDHB15Q9Y5E8 787 aa13.45□□□□□ -0.26
SS18-213ENST00000579640 LRRFIP2Q9Y608 721 aaKnown RBP13.45□□□□□ -0.26
SS18-213ENST00000579640 MSH5O43196 834 aa13.44□□□□□ -0.26
SS18-213ENST00000579640 HSP90B1P14625 803 aaKnown RBP13.44□□□□□ -0.26
SS18-213ENST00000579640 NYXQ9GZU5 481 aa13.44□□□□□ -0.26
SS18-213ENST00000579640 C1orf115Q9H7X2 142 aa13.44□□□□□ -0.26
SS18-213ENST00000579640 TRMT112Q9UI30 125 aaKnown RBP13.44□□□□□ -0.26
SS18-213ENST00000579640 CARMIL3Q8ND23 1372 aa13.44□□□□□ -0.26
SS18-213ENST00000579640 SUSD4Q5VX71 490 aa13.43□□□□□ -0.26
SS18-213ENST00000579640 ANKRD44Q8N8A2 993 aa13.43□□□□□ -0.26
SS18-213ENST00000579640 SH3TC1Q8TE82 1336 aa13.43□□□□□ -0.26
SS18-213ENST00000579640 NTSR2O95665 410 aa13.43□□□□□ -0.26
SS18-213ENST00000579640 HDAC1Q13547 482 aaPredicted RBP13.43□□□□□ -0.26
SS18-213ENST00000579640 CEP85Q6P2H3 762 aa13.43□□□□□ -0.26
SS18-213ENST00000579640 SUCLG2Q96I99 432 aa13.43□□□□□ -0.26
SS18-213ENST00000579640 PLA2G12BQ9BX93 195 aa13.43□□□□□ -0.26
SS18-213ENST00000579640 RWDD1Q9H446 243 aaPredicted RBP13.43□□□□□ -0.26
SS18-213ENST00000579640 HMMRO75330 724 aa13.42□□□□□ -0.26
SS18-213ENST00000579640 TM4SF1P30408 202 aa13.42□□□□□ -0.26
SS18-213ENST00000579640 MTX1Q13505 466 aa13.42□□□□□ -0.26
SS18-213ENST00000579640 NFIXQ14938 502 aa13.42□□□□□ -0.26
SS18-213ENST00000579640 BICDL1Q6ZP65 573 aa13.42□□□□□ -0.26
SS18-213ENST00000579640 FAM89AQ96GI7 184 aa13.42□□□□□ -0.26
SS18-213ENST00000579640 ATP8B2P98198 1209 aa13.41□□□□□ -0.26
SS18-213ENST00000579640 TPTE2Q6XPS3 522 aa13.41□□□□□ -0.26
SS18-213ENST00000579640 NBPF5PQ86XG9 351 aaPredicted RBP13.41□□□□□ -0.26
SS18-213ENST00000579640 SLC16A10Q8TF71 515 aa13.41□□□□□ -0.26
SS18-213ENST00000579640 IRS4O14654 1257 aaPredicted RBP13.41□□□□□ -0.26
SS18-213ENST00000579640 RABL6Q3YEC7 729 aaPredicted RBP13.41□□□□□ -0.26
SS18-213ENST00000579640 KAZALD1Q96I82 304 aa13.41□□□□□ -0.26
SS18-213ENST00000579640 BICC1Q9H694 974 aaKnown RBP13.41□□□□□ -0.26
SS18-213ENST00000579640 LAMB2P55268 1798 aa13.4□□□□□ -0.26
SS18-213ENST00000579640 PDE8AO60658 829 aa13.4□□□□□ -0.26
SS18-213ENST00000579640 RTL5Q5HYW3 569 aaPredicted RBP13.4□□□□□ -0.26
SS18-213ENST00000579640 B4GALNT3Q6L9W6 998 aa13.4□□□□□ -0.26
SS18-213ENST00000579640 JARID2Q92833 1246 aaPredicted RBP13.4□□□□□ -0.26
SS18-213ENST00000579640 FAM177BA6PVY3 158 aa13.39□□□□□ -0.27
SS18-213ENST00000579640 GTF2E1P29083 439 aaPredicted RBP13.39□□□□□ -0.27
SS18-213ENST00000579640 SLC10A5Q5PT55 438 aa13.39□□□□□ -0.27
SS18-213ENST00000579640 SIRT2Q8IXJ6 389 aa13.39□□□□□ -0.27
SS18-213ENST00000579640 MYH3P11055 1940 aa13.39□□□□□ -0.27
SS18-213ENST00000579640 FOXO4P98177 505 aa13.39□□□□□ -0.27
SS18-213ENST00000579640 EPHA10Q5JZY3 1008 aa13.39□□□□□ -0.27
SS18-213ENST00000579640 CENPQQ7L2Z9 268 aaPredicted RBP13.39□□□□□ -0.27
SS18-213ENST00000579640 SSH3Q8TE77 659 aa13.39□□□□□ -0.27
SS18-213ENST00000579640 POLRMTO00411 1230 aaKnown RBP13.38□□□□□ -0.27
SS18-213ENST00000579640 SRGAP3O43295 1099 aa13.38□□□□□ -0.27
SS18-213ENST00000579640 SERPINB2P05120 415 aa13.38□□□□□ -0.27
SS18-213ENST00000579640 POLA2Q14181 598 aa13.38□□□□□ -0.27
SS18-213ENST00000579640 NUTM1Q86Y26 1132 aa13.38□□□□□ -0.27
SS18-213ENST00000579640 CNBD1Q8NA66 436 aa13.38□□□□□ -0.27
SS18-213ENST00000579640 RIC1Q4ADV7 1423 aa13.38□□□□□ -0.27
SS18-213ENST00000579640 DDX60Q8IY21 1712 aaKnown RBP13.37□□□□□ -0.27
SS18-213ENST00000579640 PNMA6EA0A0J9YXQ4 647 aa13.37□□□□□ -0.27
SS18-213ENST00000579640 NPHP1O15259 732 aa13.37□□□□□ -0.27
SS18-213ENST00000579640 IGHDP01880 384 aa13.37□□□□□ -0.27
SS18-213ENST00000579640 CSF1RP07333 972 aa13.37□□□□□ -0.27
SS18-213ENST00000579640 CTSWP56202 376 aa13.37□□□□□ -0.27
SS18-213ENST00000579640 DDR1Q08345 913 aa13.37□□□□□ -0.27
SS18-213ENST00000579640 ERFEQ4G0M1 354 aa13.37□□□□□ -0.27
SS18-213ENST00000579640 LMBR1LQ6UX01 489 aa13.37□□□□□ -0.27
SS18-213ENST00000579640 SYNE4Q8N205 404 aa13.37□□□□□ -0.27
SS18-213ENST00000579640 PARP3Q9Y6F1 533 aa13.37□□□□□ -0.27
SS18-213ENST00000579640 KDM2BQ8NHM5 1336 aa13.37□□□□□ -0.27
SS18-213ENST00000579640 ST5P78524 1137 aa13.36□□□□□ -0.27
SS18-213ENST00000579640 GCC1Q96CN9 775 aa13.36□□□□□ -0.27
SS18-213ENST00000579640 NRXN2Q9P2S2 1712 aa13.36□□□□□ -0.27
SS18-213ENST00000579640 CASZ1Q86V15 1759 aa13.36□□□□□ -0.27
SS18-213ENST00000579640 MMP10P09238 476 aa13.36□□□□□ -0.27
SS18-213ENST00000579640 HCLS1P14317 486 aaPredicted RBP13.36□□□□□ -0.27
SS18-213ENST00000579640 PRR5LQ6MZQ0 368 aa13.36□□□□□ -0.27
SS18-213ENST00000579640 DCTPP1Q9H773 170 aa13.36□□□□□ -0.27
SS18-213ENST00000579640 RTL9Q8NET4 1388 aa13.35□□□□□ -0.27
SS18-213ENST00000579640 ABCC12Q96J65 1359 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms