RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ITGBL1O95965 494 aaPredicted RBP15.22■□□□□ 0.03
LDLR-212ENST00000560467 EPHX2P34913 555 aa15.22■□□□□ 0.03
LDLR-212ENST00000560467 IARSP41252 1262 aaKnown RBP15.22■□□□□ 0.03
LDLR-212ENST00000560467 VEGFBP49765 207 aa15.22■□□□□ 0.03
LDLR-212ENST00000560467 SLC51AQ86UW1 340 aa15.22■□□□□ 0.03
LDLR-212ENST00000560467 WWC1Q8IX03 1113 aa15.22■□□□□ 0.03
LDLR-212ENST00000560467 RTKN2Q8IZC4 609 aa15.22■□□□□ 0.03
LDLR-212ENST00000560467 SYNE4Q8N205 404 aa15.22■□□□□ 0.03
LDLR-212ENST00000560467 MYH16Q9H6N6 1097 aa15.22■□□□□ 0.03
LDLR-212ENST00000560467 ARFGEF2Q9Y6D5 1785 aa15.21■□□□□ 0.03
LDLR-212ENST00000560467 TMEM88BA6NKF7 163 aa15.21■□□□□ 0.03
LDLR-212ENST00000560467 E9PSI1 815 aa15.21■□□□□ 0.03
LDLR-212ENST00000560467 HTATSF1O43719 755 aaKnown RBP15.21■□□□□ 0.03
LDLR-212ENST00000560467 GTF2E1P29083 439 aaPredicted RBP15.21■□□□□ 0.03
LDLR-212ENST00000560467 NUTM1Q86Y26 1132 aa15.21■□□□□ 0.03
LDLR-212ENST00000560467 CLEC11AQ9Y240 323 aa15.21■□□□□ 0.03
LDLR-212ENST00000560467 CACNA1SQ13698 1873 aa15.2■□□□□ 0.02
LDLR-212ENST00000560467 SNED1Q8TER0 1413 aa15.2■□□□□ 0.02
LDLR-212ENST00000560467 FZD9O00144 591 aa15.2■□□□□ 0.02
LDLR-212ENST00000560467 TAF7Q15545 349 aaPredicted RBP15.2■□□□□ 0.02
LDLR-212ENST00000560467 MAP1SQ66K74 1059 aaPredicted RBP15.2■□□□□ 0.02
LDLR-212ENST00000560467 CRY2Q49AN0 593 aa15.19■□□□□ 0.02
LDLR-212ENST00000560467 COL4A5P29400 1685 aa15.19■□□□□ 0.02
LDLR-212ENST00000560467 GPTP24298 496 aa15.18■□□□□ 0.02
LDLR-212ENST00000560467 ALDH1B1P30837 517 aa15.18■□□□□ 0.02
LDLR-212ENST00000560467 TTLL7Q6ZT98 887 aa15.18■□□□□ 0.02
LDLR-212ENST00000560467 CNTROBQ8N137 903 aa15.18■□□□□ 0.02
LDLR-212ENST00000560467 AIDAQ96BJ3 306 aa15.18■□□□□ 0.02
LDLR-212ENST00000560467 IL16Q14005 1332 aa15.17■□□□□ 0.02
LDLR-212ENST00000560467 CTCFP49711 727 aaPredicted RBP15.17■□□□□ 0.02
LDLR-212ENST00000560467 PNMA8AQ86V59 439 aaPredicted RBP15.17■□□□□ 0.02
LDLR-212ENST00000560467 GPC2Q8N158 579 aa15.17■□□□□ 0.02
LDLR-212ENST00000560467 PSMD1Q99460 953 aa15.17■□□□□ 0.02
LDLR-212ENST00000560467 THUMPD2Q9BTF0 503 aaKnown RBP15.17■□□□□ 0.02
LDLR-212ENST00000560467 NYXQ9GZU5 481 aa15.17■□□□□ 0.02
LDLR-212ENST00000560467 PRDM10Q9NQV6 1147 aa15.17■□□□□ 0.02
LDLR-212ENST00000560467 GJA3Q9Y6H8 435 aa15.17■□□□□ 0.02
LDLR-212ENST00000560467 MAP3K15Q6ZN16 1313 aa15.17■□□□□ 0.02
LDLR-212ENST00000560467 UBN2Q6ZU65 1347 aa15.17■□□□□ 0.02
LDLR-212ENST00000560467 SCN4AP35499 1836 aa15.16■□□□□ 0.02
LDLR-212ENST00000560467 ERVV-1B6SEH8 477 aa15.16■□□□□ 0.02
LDLR-212ENST00000560467 GNAI1P63096 354 aa15.16■□□□□ 0.02
LDLR-212ENST00000560467 C3orf67Q6ZVT6 689 aa15.16■□□□□ 0.02
LDLR-212ENST00000560467 JDP2Q8WYK2 163 aa15.16■□□□□ 0.02
LDLR-212ENST00000560467 RPGRQ92834 1020 aaKnown RBP15.16■□□□□ 0.02
LDLR-212ENST00000560467 ZBTB3Q9H5J0 574 aa15.16■□□□□ 0.02
LDLR-212ENST00000560467 WBP1LQ9NX94 342 aa15.16■□□□□ 0.02
LDLR-212ENST00000560467 LAS1LQ9Y4W2 734 aaKnown RBP15.16■□□□□ 0.02
LDLR-212ENST00000560467 ADAMTSL1Q8N6G6 1762 aa15.16■□□□□ 0.02
LDLR-212ENST00000560467 RASSF10A6NK89 507 aa15.15■□□□□ 0.02
LDLR-212ENST00000560467 TCERG1O14776 1098 aaKnown RBP15.15■□□□□ 0.02
LDLR-212ENST00000560467 MYL6BP14649 208 aa15.15■□□□□ 0.02
LDLR-212ENST00000560467 LBX1P52954 281 aa15.15■□□□□ 0.02
LDLR-212ENST00000560467 EIF4A1P60842 406 aaKnown RBP15.15■□□□□ 0.02
LDLR-212ENST00000560467 FMR1Q06787 632 aaKnown RBP eCLIP15.15■□□□□ 0.021e-7■□□□□ 9.3
LDLR-212ENST00000560467 KIF6Q6ZMV9 814 aa15.15■□□□□ 0.02
LDLR-212ENST00000560467 TRIM35Q9UPQ4 493 aa15.15■□□□□ 0.02
LDLR-212ENST00000560467 HOXA10P31260 410 aaPredicted RBP15.14■□□□□ 0.01
LDLR-212ENST00000560467 EIF6P56537 245 aaKnown RBP15.14■□□□□ 0.01
LDLR-212ENST00000560467 SLFN5Q08AF3 891 aa15.14■□□□□ 0.01
LDLR-212ENST00000560467 SUSD4Q5VX71 490 aa15.14■□□□□ 0.01
LDLR-212ENST00000560467 LARGE2Q8N3Y3 721 aa15.14■□□□□ 0.01
LDLR-212ENST00000560467 ABT1Q9ULW3 272 aaKnown RBP15.14■□□□□ 0.01
LDLR-212ENST00000560467 ZNF521Q96K83 1311 aa15.14■□□□□ 0.01
LDLR-212ENST00000560467 IBTKQ9P2D0 1353 aaPredicted RBP15.13■□□□□ 0.01
LDLR-212ENST00000560467 PPEF1O14829 653 aaPredicted RBP15.13■□□□□ 0.01
LDLR-212ENST00000560467 NTSR2O95665 410 aa15.13■□□□□ 0.01
LDLR-212ENST00000560467 EPS15P42566 896 aa15.13■□□□□ 0.01
LDLR-212ENST00000560467 SCNN1DP51172 638 aa15.13■□□□□ 0.01
LDLR-212ENST00000560467 DEFB115Q30KQ5 88 aa15.13■□□□□ 0.01
LDLR-212ENST00000560467 RIC1Q4ADV7 1423 aa15.13■□□□□ 0.01
LDLR-212ENST00000560467 CC2D2BQ6DHV5 1058 aa15.13■□□□□ 0.01
LDLR-212ENST00000560467 HSPA8P11142 646 aaKnown RBP15.12■□□□□ 0.01
LDLR-212ENST00000560467 LMOD1P29536 600 aaPredicted RBP15.12■□□□□ 0.01
LDLR-212ENST00000560467 ZNF34Q8IZ26 560 aa15.12■□□□□ 0.01
LDLR-212ENST00000560467 CDCA7LQ96GN5 454 aa15.12■□□□□ 0.01
LDLR-212ENST00000560467 RBM17Q96I25 401 aaKnown RBP15.12■□□□□ 0.01
LDLR-212ENST00000560467 DDX21Q9NR30 783 aaKnown RBP eCLIP15.12■□□□□ 0.01
LDLR-212ENST00000560467 IFT57Q9NWB7 429 aa15.12■□□□□ 0.01
LDLR-212ENST00000560467 WDR33Q9C0J8 1336 aaKnown RBP15.12■□□□□ 0.01
LDLR-212ENST00000560467 LTBP1Q14766 1721 aa15.12■□□□□ 0.01
LDLR-212ENST00000560467 LAMB4A4D0S4 1761 aa15.11■□□□□ 0.01
LDLR-212ENST00000560467 TRAF5O00463 557 aa15.11■□□□□ 0.01
LDLR-212ENST00000560467 CFAP44Q96MT7 982 aa15.11■□□□□ 0.01
LDLR-212ENST00000560467 CRAMP1Q96RY5 1269 aa15.11■□□□□ 0.01
LDLR-212ENST00000560467 NEFLP07196 543 aa15.1■□□□□ 0.01
LDLR-212ENST00000560467 NIM1KQ8IY84 436 aa15.1■□□□□ 0.01
LDLR-212ENST00000560467 CHMP4AQ9BY43 222 aa15.1■□□□□ 0.01
LDLR-212ENST00000560467 BABAM1Q9NWV8 329 aa15.1■□□□□ 0.01
LDLR-212ENST00000560467 KDM3BQ7LBC6 1761 aa15.09■□□□□ 0.01
LDLR-212ENST00000560467 PPIP5K2O43314 1243 aa15.09■□□□□ 0.01
LDLR-212ENST00000560467 GRM1Q13255 1194 aa15.09■□□□□ 0.01
LDLR-212ENST00000560467 AOC3Q16853 763 aa15.09■□□□□ 0.01
LDLR-212ENST00000560467 PROSER3Q2NL68 480 aa15.09■□□□□ 0.01
LDLR-212ENST00000560467 GIGYF2Q6Y7W6 1299 aaKnown RBP15.09■□□□□ 0.01
LDLR-212ENST00000560467 PAXIP1Q6ZW49 1069 aaPredicted RBP15.09■□□□□ 0.01
LDLR-212ENST00000560467 ANXA1P04083 346 aa15.08■□□□□ 0
LDLR-212ENST00000560467 CT47B1P0C2W7 299 aaPredicted RBP15.08■□□□□ 0
LDLR-212ENST00000560467 MAP2K1Q02750 393 aaPredicted RBP15.08■□□□□ 0
LDLR-212ENST00000560467 LRP10Q7Z4F1 713 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 176.9 ms