RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 PCCAP05165 728 aaPredicted RBP15.6■□□□□ 0.09
USP3-213ENST00000559711 PTPN12Q05209 780 aaKnown RBP15.6■□□□□ 0.09
USP3-213ENST00000559711 LMBR1LQ6UX01 489 aa15.6■□□□□ 0.09
USP3-213ENST00000559711 CLASRPQ8N2M8 674 aaKnown RBP15.6■□□□□ 0.09
USP3-213ENST00000559711 CICQ96RK0 1608 aaPredicted RBP15.59■□□□□ 0.09
USP3-213ENST00000559711 DZIP3Q86Y13 1208 aaKnown RBP15.59■□□□□ 0.09
USP3-213ENST00000559711 NUTM1Q86Y26 1132 aa15.59■□□□□ 0.09
USP3-213ENST00000559711 C22orf23Q9BZE7 217 aa15.59■□□□□ 0.09
USP3-213ENST00000559711 TSHZ3Q63HK5 1081 aa15.58■□□□□ 0.08
USP3-213ENST00000559711 NLRP10Q86W26 655 aa15.58■□□□□ 0.08
USP3-213ENST00000559711 ZBTB38Q8NAP3 1195 aaPredicted RBP15.58■□□□□ 0.08
USP3-213ENST00000559711 ARXQ96QS3 562 aa15.58■□□□□ 0.08
USP3-213ENST00000559711 PLA2G12BQ9BX93 195 aa15.58■□□□□ 0.08
USP3-213ENST00000559711 KAT6BQ8WYB5 2073 aa15.58■□□□□ 0.08
USP3-213ENST00000559711 PI4K2BQ8TCG2 481 aa15.57■□□□□ 0.08
USP3-213ENST00000559711 QTRT2Q9H974 415 aaKnown RBP15.57■□□□□ 0.08
USP3-213ENST00000559711 TBC1D2BQ9UPU7 963 aa15.57■□□□□ 0.08
USP3-213ENST00000559711 TTC41PQ6P2S7 1318 aa15.57■□□□□ 0.08
USP3-213ENST00000559711 RBM25P49756 843 aaKnown RBP15.57■□□□□ 0.08
USP3-213ENST00000559711 PTF1AQ7RTS3 328 aa15.57■□□□□ 0.08
USP3-213ENST00000559711 SEPT12Q8IYM1 358 aa15.57■□□□□ 0.08
USP3-213ENST00000559711 ZNF34Q8IZ26 560 aa15.57■□□□□ 0.08
USP3-213ENST00000559711 KLHDC4Q8TBB5 520 aa15.57■□□□□ 0.08
USP3-213ENST00000559711 AFDNP55196 1824 aaKnown RBP15.56■□□□□ 0.08
USP3-213ENST00000559711 RTL5Q5HYW3 569 aaPredicted RBP15.56■□□□□ 0.08
USP3-213ENST00000559711 CASC1Q6TDU7 716 aa15.56■□□□□ 0.08
USP3-213ENST00000559711 SIL1Q9H173 461 aa15.56■□□□□ 0.08
USP3-213ENST00000559711 CDHR2Q9BYE9 1310 aa15.56■□□□□ 0.08
USP3-213ENST00000559711 ZNF831Q5JPB2 1677 aa15.55■□□□□ 0.08
USP3-213ENST00000559711 RREB1Q92766 1687 aa15.55■□□□□ 0.08
USP3-213ENST00000559711 CAMTA2O94983 1202 aa15.54■□□□□ 0.08
USP3-213ENST00000559711 CSF1RP07333 972 aa15.54■□□□□ 0.08
USP3-213ENST00000559711 IFIT2P09913 472 aaKnown RBP15.54■□□□□ 0.08
USP3-213ENST00000559711 LINC00116Q8NCU8 138 aa15.54■□□□□ 0.08
USP3-213ENST00000559711 EAF2Q96CJ1 260 aaPredicted RBP15.54■□□□□ 0.08
USP3-213ENST00000559711 FAM89AQ96GI7 184 aa15.54■□□□□ 0.08
USP3-213ENST00000559711 ECHDC1Q9NTX5 307 aa15.54■□□□□ 0.08
USP3-213ENST00000559711 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.54■□□□□ 0.08
USP3-213ENST00000559711 GLRX3O76003 335 aaKnown RBP15.54■□□□□ 0.08
USP3-213ENST00000559711 GPTP24298 496 aa15.54■□□□□ 0.08
USP3-213ENST00000559711 RC3H1Q5TC82 1133 aaKnown RBP15.54■□□□□ 0.08
USP3-213ENST00000559711 AACSQ86V21 672 aa15.54■□□□□ 0.08
USP3-213ENST00000559711 GPATCH3Q96I76 525 aa15.54■□□□□ 0.08
USP3-213ENST00000559711 CNTNAP4Q9C0A0 1308 aa15.54■□□□□ 0.08
USP3-213ENST00000559711 ERC2O15083 957 aa15.53■□□□□ 0.08
USP3-213ENST00000559711 FAM182BQ5T319 152 aa15.53■□□□□ 0.08
USP3-213ENST00000559711 UBN2Q6ZU65 1347 aa15.52■□□□□ 0.08
USP3-213ENST00000559711 TRIM6-TRIM34B2RNG4 842 aa15.52■□□□□ 0.08
USP3-213ENST00000559711 FBXO3Q9UK99 471 aa15.52■□□□□ 0.08
USP3-213ENST00000559711 CHMP3Q9Y3E7 222 aa15.52■□□□□ 0.08
USP3-213ENST00000559711 RGL2O15211 777 aa15.51■□□□□ 0.07
USP3-213ENST00000559711 CIAO1O76071 339 aa15.51■□□□□ 0.07
USP3-213ENST00000559711 CHMLP26374 656 aa15.51■□□□□ 0.07
USP3-213ENST00000559711 TFCP2Q12800 502 aa15.51■□□□□ 0.07
USP3-213ENST00000559711 ATG9AQ7Z3C6 839 aa15.51■□□□□ 0.07
USP3-213ENST00000559711 RILPL2Q969X0 211 aa15.51■□□□□ 0.07
USP3-213ENST00000559711 TRMT112Q9UI30 125 aaKnown RBP15.51■□□□□ 0.07
USP3-213ENST00000559711 IL15P40933 162 aaPredicted RBP15.51■□□□□ 0.07
USP3-213ENST00000559711 CLEC4GQ6UXB4 293 aa15.51■□□□□ 0.07
USP3-213ENST00000559711 SYNE4Q8N205 404 aa15.51■□□□□ 0.07
USP3-213ENST00000559711 USP26Q9BXU7 913 aa15.51■□□□□ 0.07
USP3-213ENST00000559711 CCDC8Q9H0W5 538 aaPredicted RBP15.51■□□□□ 0.07
USP3-213ENST00000559711 NHSQ6T4R5 1651 aa15.51■□□□□ 0.07
USP3-213ENST00000559711 EYA2O00167 538 aa15.5■□□□□ 0.07
USP3-213ENST00000559711 IRS4O14654 1257 aaPredicted RBP15.5■□□□□ 0.07
USP3-213ENST00000559711 PARP10Q53GL7 1025 aa15.5■□□□□ 0.07
USP3-213ENST00000559711 TNNI3KQ59H18 835 aa15.5■□□□□ 0.07
USP3-213ENST00000559711 CNTROBQ8N137 903 aa15.5■□□□□ 0.07
USP3-213ENST00000559711 AK7Q96M32 723 aa15.5■□□□□ 0.07
USP3-213ENST00000559711 BCL11BQ9C0K0 894 aaPredicted RBP15.5■□□□□ 0.07
USP3-213ENST00000559711 GPR108Q9NPR9 543 aa15.5■□□□□ 0.07
USP3-213ENST00000559711 FPGT-TNNI3KV9GXZ4 949 aa15.5■□□□□ 0.07
USP3-213ENST00000559711 REC8O95072 547 aa15.49■□□□□ 0.07
USP3-213ENST00000559711 CCDC57Q2TAC2 916 aa15.49■□□□□ 0.07
USP3-213ENST00000559711 TTLL11Q8NHH1 800 aa15.49■□□□□ 0.07
USP3-213ENST00000559711 ESYT1Q9BSJ8 1104 aa15.49■□□□□ 0.07
USP3-213ENST00000559711 TLR7Q9NYK1 1049 aaKnown RBP15.49■□□□□ 0.07
USP3-213ENST00000559711 MYH14Q7Z406 1995 aaKnown RBP15.48■□□□□ 0.07
USP3-213ENST00000559711 PDE8AO60658 829 aa15.48■□□□□ 0.07
USP3-213ENST00000559711 RPS6KA4O75676 772 aa15.48■□□□□ 0.07
USP3-213ENST00000559711 CTSWP56202 376 aa15.48■□□□□ 0.07
USP3-213ENST00000559711 KCNQ4P56696 695 aa15.48■□□□□ 0.07
USP3-213ENST00000559711 BECN1Q14457 450 aa15.48■□□□□ 0.07
USP3-213ENST00000559711 SUSD4Q5VX71 490 aa15.48■□□□□ 0.07
USP3-213ENST00000559711 KIF2CQ99661 725 aa15.48■□□□□ 0.07
USP3-213ENST00000559711 DAXXQ9UER7 740 aaPredicted RBP15.48■□□□□ 0.07
USP3-213ENST00000559711 CCNL1Q9UK58 526 aaPredicted RBP15.48■□□□□ 0.07
USP3-213ENST00000559711 ZNF652Q9Y2D9 606 aa15.48■□□□□ 0.07
USP3-213ENST00000559711 COL5A3P25940 1745 aaPredicted RBP15.48■□□□□ 0.07
USP3-213ENST00000559711 ZNF594Q96JF6 807 aaPredicted RBP15.48■□□□□ 0.07
USP3-213ENST00000559711 UTP14AQ9BVJ6 771 aaKnown RBP15.48■□□□□ 0.07
USP3-213ENST00000559711 DBNLQ9UJU6 430 aaKnown RBP15.48■□□□□ 0.07
USP3-213ENST00000559711 IFIT5Q13325 482 aaKnown RBP15.47■□□□□ 0.07
USP3-213ENST00000559711 LRRC24Q50LG9 513 aa15.47■□□□□ 0.07
USP3-213ENST00000559711 FAM196AQ6ZSG2 479 aa15.47■□□□□ 0.07
USP3-213ENST00000559711 ERICH6Q7L0X2 663 aa15.47■□□□□ 0.07
USP3-213ENST00000559711 TUBGCP6Q96RT7 1819 aa15.46■□□□□ 0.07
USP3-213ENST00000559711 SH3TC1Q8TE82 1336 aa15.46■□□□□ 0.07
USP3-213ENST00000559711 MAP4K4O95819 1239 aaPredicted RBP15.46■□□□□ 0.07
USP3-213ENST00000559711 ATP5JP18859 108 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms