RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 NBPF14Q5TI25 921 aa22.39■■□□□ 1.17
PRPF40B-208ENST00000548436 FOXD4L5Q5VV16 416 aaPredicted RBP22.39■■□□□ 1.17
PRPF40B-208ENST00000548436 NBPF10Q6P3W6 841 aaKnown RBP22.39■■□□□ 1.17
PRPF40B-208ENST00000548436 NBPF15Q8N660 670 aa22.39■■□□□ 1.17
PRPF40B-208ENST00000548436 PLBD2Q8NHP8 589 aa22.39■■□□□ 1.17
PRPF40B-208ENST00000548436 FOXD4L4Q8WXT5 416 aaPredicted RBP22.39■■□□□ 1.17
PRPF40B-208ENST00000548436 BRD1O95696 1058 aa22.38■■□□□ 1.17
PRPF40B-208ENST00000548436 COPRSQ9NQ92 184 aa22.38■■□□□ 1.17
PRPF40B-208ENST00000548436 RABL6Q3YEC7 729 aaPredicted RBP22.38■■□□□ 1.17
PRPF40B-208ENST00000548436 COL15A1P39059 1388 aa22.37■■□□□ 1.17
PRPF40B-208ENST00000548436 PAPPAQ13219 1627 aa22.37■■□□□ 1.17
PRPF40B-208ENST00000548436 PTPN12Q05209 780 aaKnown RBP22.37■■□□□ 1.17
PRPF40B-208ENST00000548436 BOLA2Q9H3K6 86 aa22.37■■□□□ 1.17
PRPF40B-208ENST00000548436 NUP188Q5SRE5 1749 aa22.37■■□□□ 1.17
PRPF40B-208ENST00000548436 KCPQ6ZWJ8 1503 aa22.37■■□□□ 1.17
PRPF40B-208ENST00000548436 A0A087WZG4 1122 aa22.37■■□□□ 1.17
PRPF40B-208ENST00000548436 ERVV-2B6SEH9 535 aa22.37■■□□□ 1.17
PRPF40B-208ENST00000548436 PRPF40AO75400 957 aaKnown RBP22.37■■□□□ 1.17
PRPF40B-208ENST00000548436 CASP7P55210 303 aa22.37■■□□□ 1.17
PRPF40B-208ENST00000548436 FAM227BQ96M60 508 aa22.37■■□□□ 1.17
PRPF40B-208ENST00000548436 AK2P54819 239 aa22.35■■□□□ 1.17
PRPF40B-208ENST00000548436 NMIQ13287 307 aaPredicted RBP22.35■■□□□ 1.17
PRPF40B-208ENST00000548436 NKX1-1Q15270 411 aaPredicted RBP22.35■■□□□ 1.17
PRPF40B-208ENST00000548436 ERBB4Q15303 1308 aa22.35■■□□□ 1.17
PRPF40B-208ENST00000548436 IL2RBP14784 551 aa22.35■■□□□ 1.17
PRPF40B-208ENST00000548436 CPA1P15085 419 aa22.35■■□□□ 1.17
PRPF40B-208ENST00000548436 CARD10Q9BWT7 1032 aa22.35■■□□□ 1.17
PRPF40B-208ENST00000548436 CCDC171Q6TFL3 1326 aa22.34■■□□□ 1.17
PRPF40B-208ENST00000548436 PRPF40BQ6NWY9 871 aaKnown RBP22.34■■□□□ 1.17
PRPF40B-208ENST00000548436 TTLL7Q6ZT98 887 aa22.34■■□□□ 1.17
PRPF40B-208ENST00000548436 RUFY3Q7L099 469 aa22.34■■□□□ 1.17
PRPF40B-208ENST00000548436 KCNB2Q92953 911 aa22.34■■□□□ 1.17
PRPF40B-208ENST00000548436 CASTP20810 708 aaKnown RBP22.34■■□□□ 1.17
PRPF40B-208ENST00000548436 NECTIN1Q15223 517 aa22.34■■□□□ 1.17
PRPF40B-208ENST00000548436 ADCK5Q3MIX3 580 aa22.34■■□□□ 1.17
PRPF40B-208ENST00000548436 DDX54Q8TDD1 881 aaKnown RBP22.34■■□□□ 1.17
PRPF40B-208ENST00000548436 LARP6Q9BRS8 491 aaKnown RBP22.34■■□□□ 1.17
PRPF40B-208ENST00000548436 HIP1O00291 1037 aa22.33■■□□□ 1.17
PRPF40B-208ENST00000548436 A1BGP04217 495 aa22.33■■□□□ 1.17
PRPF40B-208ENST00000548436 NCLP19338 710 aaKnown RBP22.33■■□□□ 1.17
PRPF40B-208ENST00000548436 TFCP2Q12800 502 aa22.33■■□□□ 1.17
PRPF40B-208ENST00000548436 GPT2Q8TD30 523 aa22.33■■□□□ 1.17
PRPF40B-208ENST00000548436 STRN4Q9NRL3 753 aa22.33■■□□□ 1.17
PRPF40B-208ENST00000548436 TJP1Q07157 1748 aa22.33■■□□□ 1.16
PRPF40B-208ENST00000548436 CAVIN1Q6NZI2 390 aaKnown RBP22.32■■□□□ 1.16
PRPF40B-208ENST00000548436 DBNLQ9UJU6 430 aaKnown RBP22.32■■□□□ 1.16
PRPF40B-208ENST00000548436 TCHHQ07283 1943 aa22.32■■□□□ 1.16
PRPF40B-208ENST00000548436 A0A0D9SFI3 127 aa22.32■■□□□ 1.16
PRPF40B-208ENST00000548436 TNNI3KQ59H18 835 aa22.32■■□□□ 1.16
PRPF40B-208ENST00000548436 FAM43AQ8N2R8 423 aa22.32■■□□□ 1.16
PRPF40B-208ENST00000548436 FSD1Q9BTV5 496 aa22.32■■□□□ 1.16
PRPF40B-208ENST00000548436 SNRKQ9NRH2 765 aa22.32■■□□□ 1.16
PRPF40B-208ENST00000548436 FPGT-TNNI3KV9GXZ4 949 aa22.32■■□□□ 1.16
PRPF40B-208ENST00000548436 LIMCH1Q9UPQ0 1083 aa22.31■■□□□ 1.16
PRPF40B-208ENST00000548436 TOGARAM1Q9Y4F4 1720 aa22.31■■□□□ 1.16
PRPF40B-208ENST00000548436 H7C1W4 665 aa22.3■■□□□ 1.16
PRPF40B-208ENST00000548436 FOXO4P98177 505 aa22.3■■□□□ 1.16
PRPF40B-208ENST00000548436 MAP4K1Q92918 833 aa22.3■■□□□ 1.16
PRPF40B-208ENST00000548436 JAKMIP1Q96N16 626 aaKnown RBP22.3■■□□□ 1.16
PRPF40B-208ENST00000548436 RBM8AQ9Y5S9 174 aaKnown RBP22.3■■□□□ 1.16
PRPF40B-208ENST00000548436 LMBR1LQ6UX01 489 aa22.3■■□□□ 1.16
PRPF40B-208ENST00000548436 EDC3Q96F86 508 aaKnown RBP22.3■■□□□ 1.16
PRPF40B-208ENST00000548436 ZSWIM6Q9HCJ5 1215 aa22.3■■□□□ 1.16
PRPF40B-208ENST00000548436 LTBP4Q8N2S1 1624 aa22.29■■□□□ 1.16
PRPF40B-208ENST00000548436 TM6SF1Q9BZW5 370 aa22.29■■□□□ 1.16
PRPF40B-208ENST00000548436 RPAP1Q9BWH6 1393 aaPredicted RBP22.29■■□□□ 1.16
PRPF40B-208ENST00000548436 TNS2Q63HR2 1409 aa22.29■■□□□ 1.16
PRPF40B-208ENST00000548436 ATP5JP18859 108 aa22.29■■□□□ 1.16
PRPF40B-208ENST00000548436 ZNF445P59923 1031 aa22.29■■□□□ 1.16
PRPF40B-208ENST00000548436 ZSCAN23Q3MJ62 389 aa22.29■■□□□ 1.16
PRPF40B-208ENST00000548436 CREB3L3Q68CJ9 461 aa22.29■■□□□ 1.16
PRPF40B-208ENST00000548436 NHSL1Q5SYE7 1610 aa22.28■■□□□ 1.16
PRPF40B-208ENST00000548436 LARGE1O95461 756 aa22.28■■□□□ 1.16
PRPF40B-208ENST00000548436 EVA1CP58658 441 aa22.28■■□□□ 1.16
PRPF40B-208ENST00000548436 VPS53Q5VIR6 699 aa22.28■■□□□ 1.16
PRPF40B-208ENST00000548436 NSFL1CQ9UNZ2 370 aaKnown RBP22.28■■□□□ 1.16
PRPF40B-208ENST00000548436 MED23Q9ULK4 1368 aa22.28■■□□□ 1.16
PRPF40B-208ENST00000548436 PDRG1Q9NUG6 133 aa22.27■■□□□ 1.16
PRPF40B-208ENST00000548436 CWC25Q9NXE8 425 aaPredicted RBP22.27■■□□□ 1.16
PRPF40B-208ENST00000548436 ZBTB3Q9H5J0 574 aa22.27■■□□□ 1.16
PRPF40B-208ENST00000548436 RBM27Q9P2N5 1060 aaKnown RBP22.27■■□□□ 1.16
PRPF40B-208ENST00000548436 CYP46A1Q9Y6A2 500 aa22.27■■□□□ 1.16
PRPF40B-208ENST00000548436 ZNF589Q86UQ0 364 aaPredicted RBP22.26■■□□□ 1.15
PRPF40B-208ENST00000548436 DBNDD2Q9BQY9 259 aa22.26■■□□□ 1.15
PRPF40B-208ENST00000548436 WDR33Q9C0J8 1336 aaKnown RBP22.26■■□□□ 1.15
PRPF40B-208ENST00000548436 SLC27A2O14975 620 aa22.26■■□□□ 1.15
PRPF40B-208ENST00000548436 ZKSCAN1P17029 563 aaPredicted RBP22.26■■□□□ 1.15
PRPF40B-208ENST00000548436 KCNJ4P48050 445 aa22.26■■□□□ 1.15
PRPF40B-208ENST00000548436 CHMP3Q9Y3E7 222 aa22.26■■□□□ 1.15
PRPF40B-208ENST00000548436 NDUFB9Q9Y6M9 179 aa22.26■■□□□ 1.15
PRPF40B-208ENST00000548436 COL9A3Q14050 684 aaPredicted RBP22.24■■□□□ 1.15
PRPF40B-208ENST00000548436 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.24■■□□□ 1.15
PRPF40B-208ENST00000548436 JCADQ9P266 1359 aa22.24■■□□□ 1.15
PRPF40B-208ENST00000548436 FOXD4L6Q3SYB3 417 aaPredicted RBP22.24■■□□□ 1.15
PRPF40B-208ENST00000548436 FOXD4L3Q6VB84 417 aaPredicted RBP22.24■■□□□ 1.15
PRPF40B-208ENST00000548436 ATG9AQ7Z3C6 839 aa22.24■■□□□ 1.15
PRPF40B-208ENST00000548436 RRAGDQ9NQL2 400 aaPredicted RBP22.24■■□□□ 1.15
PRPF40B-208ENST00000548436 TMEM63CQ9P1W3 806 aa22.24■■□□□ 1.15
PRPF40B-208ENST00000548436 CCDC191Q8NCU4 936 aa22.23■■□□□ 1.15
PRPF40B-208ENST00000548436 TAF6LQ9Y6J9 622 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms