RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CENPQQ7L2Z9 268 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-203ENST00000547825 POGKQ9P215 609 aa6.84□□□□□ -1.31
LIMA1-203ENST00000547825 JCADQ9P266 1359 aa6.84□□□□□ -1.31
LIMA1-203ENST00000547825 POTEEQ6S8J3 1075 aa6.83□□□□□ -1.32
LIMA1-203ENST00000547825 PANK3Q9H999 370 aa6.83□□□□□ -1.32
LIMA1-203ENST00000547825 ZNF831Q5JPB2 1677 aa6.83□□□□□ -1.32
LIMA1-203ENST00000547825 E9PSI1 815 aa6.83□□□□□ -1.32
LIMA1-203ENST00000547825 SAFB2Q14151 953 aaKnown RBP eCLIP6.83□□□□□ -1.32
LIMA1-203ENST00000547825 PUS7Q96PZ0 661 aaKnown RBP6.83□□□□□ -1.32
LIMA1-203ENST00000547825 NCAPD2Q15021 1401 aa6.83□□□□□ -1.32
LIMA1-203ENST00000547825 APAF1O14727 1248 aa6.83□□□□□ -1.32
LIMA1-203ENST00000547825 CFHP08603 1231 aa6.83□□□□□ -1.32
LIMA1-203ENST00000547825 MAP2P11137 1827 aaKnown RBP6.83□□□□□ -1.32
LIMA1-203ENST00000547825 ROCK2O75116 1388 aaKnown RBP6.83□□□□□ -1.32
LIMA1-203ENST00000547825 RIMBP2O15034 1052 aa6.82□□□□□ -1.32
LIMA1-203ENST00000547825 SAMD7Q7Z3H4 446 aa6.82□□□□□ -1.32
LIMA1-203ENST00000547825 ITPRIPQ8IWB1 547 aa6.82□□□□□ -1.32
LIMA1-203ENST00000547825 SLF2Q8IX21 1173 aa6.82□□□□□ -1.32
LIMA1-203ENST00000547825 ADAMTS8Q9UP79 889 aa6.82□□□□□ -1.32
LIMA1-203ENST00000547825 SPATA31A6Q5VVP1 1343 aa6.82□□□□□ -1.32
LIMA1-203ENST00000547825 RBM10P98175 930 aaKnown RBP6.82□□□□□ -1.32
LIMA1-203ENST00000547825 NOL8Q76FK4 1167 aaKnown RBP6.82□□□□□ -1.32
LIMA1-203ENST00000547825 NUP188Q5SRE5 1749 aa6.82□□□□□ -1.32
LIMA1-203ENST00000547825 PDE3BQ13370 1112 aa6.82□□□□□ -1.32
LIMA1-203ENST00000547825 ATP9BO43861 1147 aa6.82□□□□□ -1.32
LIMA1-203ENST00000547825 CRTC2Q53ET0 693 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-203ENST00000547825 DUSP27Q5VZP5 1158 aa6.82□□□□□ -1.32
LIMA1-203ENST00000547825 FAM174AQ8TBP5 190 aa6.82□□□□□ -1.32
LIMA1-203ENST00000547825 LY75O60449 1722 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 SIPA1L3O60292 1781 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-203ENST00000547825 WAPLQ7Z5K2 1190 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 GBP4Q96PP9 640 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 ZSWIM6Q9HCJ5 1215 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 TNNQ9UQP3 1299 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 PAPPAQ13219 1627 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 OVOS2A0A0J9YW53 1432 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 USP6P35125 1406 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 OVOS2Q6IE36 1432 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 TOGARAM1Q9Y4F4 1720 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 UBAP1LF5GYI3 381 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 PDE4CQ08493 712 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 NOM1Q5C9Z4 860 aaKnown RBP6.81□□□□□ -1.32
LIMA1-203ENST00000547825 TMEM132EQ6IEE7 984 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 PANK1Q8TE04 598 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 EIF3AQ14152 1382 aaKnown RBP6.81□□□□□ -1.32
LIMA1-203ENST00000547825 NHSQ6T4R5 1651 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 RNF19BQ6ZMZ0 732 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 SLC27A5Q9Y2P5 690 aa6.81□□□□□ -1.32
LIMA1-203ENST00000547825 DDX49Q9Y6V7 483 aaKnown RBP6.81□□□□□ -1.32
LIMA1-203ENST00000547825 CDK11BP21127 795 aaKnown RBP6.8□□□□□ -1.32
LIMA1-203ENST00000547825 CFAP53Q96M91 514 aa6.8□□□□□ -1.32
LIMA1-203ENST00000547825 RWDD1Q9H446 243 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-203ENST00000547825 USP31Q70CQ4 1352 aa6.8□□□□□ -1.32
LIMA1-203ENST00000547825 TUBGCP6Q96RT7 1819 aa6.8□□□□□ -1.32
LIMA1-203ENST00000547825 IGHDP01880 384 aa6.8□□□□□ -1.32
LIMA1-203ENST00000547825 U2AF1L5P0DN76 240 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-203ENST00000547825 U2AF1Q01081 240 aaKnown RBP eCLIP6.8□□□□□ -1.32
LIMA1-203ENST00000547825 MPNDQ8N594 471 aa6.8□□□□□ -1.32
LIMA1-203ENST00000547825 SPATA31A3Q5VYP0 1347 aa6.8□□□□□ -1.32
LIMA1-203ENST00000547825 DMRTA1Q5VZB9 504 aa6.8□□□□□ -1.32
LIMA1-203ENST00000547825 MAP10Q9P2G4 905 aa6.8□□□□□ -1.32
LIMA1-203ENST00000547825 CPDO75976 1380 aa6.79□□□□□ -1.32
LIMA1-203ENST00000547825 MORC1Q86VD1 984 aa6.79□□□□□ -1.32
LIMA1-203ENST00000547825 FAM43AQ8N2R8 423 aa6.79□□□□□ -1.32
LIMA1-203ENST00000547825 CENPJQ9HC77 1338 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-203ENST00000547825 MAPK8IP3Q9UPT6 1336 aa6.79□□□□□ -1.32
LIMA1-203ENST00000547825 CALD1Q05682 793 aaKnown RBP6.79□□□□□ -1.32
LIMA1-203ENST00000547825 BLOC1S3Q6QNY0 202 aa6.79□□□□□ -1.32
LIMA1-203ENST00000547825 USP17L3A6NCW0 530 aa6.79□□□□□ -1.32
LIMA1-203ENST00000547825 USP17L4A6NCW7 530 aa6.79□□□□□ -1.32
LIMA1-203ENST00000547825 ELL2O00472 640 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-203ENST00000547825 USP17L2Q6R6M4 530 aa6.79□□□□□ -1.32
LIMA1-203ENST00000547825 USP17L1Q7RTZ2 530 aa6.79□□□□□ -1.32
LIMA1-203ENST00000547825 CASZ1Q86V15 1759 aa6.79□□□□□ -1.32
LIMA1-203ENST00000547825 WASLO00401 505 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-203ENST00000547825 BCAR3O75815 825 aa6.78□□□□□ -1.32
LIMA1-203ENST00000547825 ATP6V1AP38606 617 aa6.78□□□□□ -1.32
LIMA1-203ENST00000547825 SERPINB4P48594 390 aa6.78□□□□□ -1.32
LIMA1-203ENST00000547825 KCNH2Q12809 1159 aa6.78□□□□□ -1.32
LIMA1-203ENST00000547825 NOVA2Q9UNW9 492 aaKnown RBP6.78□□□□□ -1.32
LIMA1-203ENST00000547825 ORAI2Q96SN7 254 aa6.78□□□□□ -1.32
LIMA1-203ENST00000547825 SMC4Q9NTJ3 1288 aa6.78□□□□□ -1.32
LIMA1-203ENST00000547825 TAF1LQ8IZX4 1826 aa6.78□□□□□ -1.32
LIMA1-203ENST00000547825 PRAM1Q96QH2 718 aa6.78□□□□□ -1.32
LIMA1-203ENST00000547825 RGS12O14924 1447 aa6.77□□□□□ -1.32
LIMA1-203ENST00000547825 TRMT2AQ8IZ69 625 aaKnown RBP6.77□□□□□ -1.33
LIMA1-203ENST00000547825 UBE2Q2Q8WVN8 375 aa6.77□□□□□ -1.33
LIMA1-203ENST00000547825 R3HCC1Q9Y3T6 440 aaKnown RBP6.77□□□□□ -1.33
LIMA1-203ENST00000547825 ITGB4P16144 1822 aa6.77□□□□□ -1.33
LIMA1-203ENST00000547825 PATL2C9JE40 543 aaKnown RBP6.77□□□□□ -1.33
LIMA1-203ENST00000547825 DISP2A7MBM2 1401 aa6.77□□□□□ -1.33
LIMA1-203ENST00000547825 PPIP5K1Q6PFW1 1433 aa6.77□□□□□ -1.33
LIMA1-203ENST00000547825 SKIP12755 728 aa6.77□□□□□ -1.33
LIMA1-203ENST00000547825 NINLQ9Y2I6 1382 aa6.77□□□□□ -1.33
LIMA1-203ENST00000547825 AK9Q5TCS8 1911 aa6.76□□□□□ -1.33
LIMA1-203ENST00000547825 USP17L5A8MUK1 530 aa6.76□□□□□ -1.33
LIMA1-203ENST00000547825 LGR5O75473 907 aa6.76□□□□□ -1.33
LIMA1-203ENST00000547825 TSGA10IPQ3SY00 556 aa6.76□□□□□ -1.33
LIMA1-203ENST00000547825 ILDR2Q71H61 639 aa6.76□□□□□ -1.33
LIMA1-203ENST00000547825 PMFBP1Q8TBY8 1022 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms