RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 ABCC12Q96J65 1359 aa12.16□□□□□ -0.46
YBX3-218ENST00000546298 RIC1Q4ADV7 1423 aa12.15□□□□□ -0.46
YBX3-218ENST00000546298 KRT24Q2M2I5 525 aa12.15□□□□□ -0.46
YBX3-218ENST00000546298 DUSP27Q5VZP5 1158 aa12.15□□□□□ -0.46
YBX3-218ENST00000546298 SYNE4Q8N205 404 aa12.15□□□□□ -0.46
YBX3-218ENST00000546298 ZNF277Q9NRM2 450 aaPredicted RBP12.15□□□□□ -0.46
YBX3-218ENST00000546298 MBIPQ9NS73 344 aa12.15□□□□□ -0.46
YBX3-218ENST00000546298 HYPKQ9NX55 129 aa12.15□□□□□ -0.46
YBX3-218ENST00000546298 CHPF2Q9P2E5 772 aa12.15□□□□□ -0.46
YBX3-218ENST00000546298 IQCA1LA6NCM1 817 aa12.14□□□□□ -0.47
YBX3-218ENST00000546298 ZNF853P0CG23 659 aa12.14□□□□□ -0.47
YBX3-218ENST00000546298 ANKRD13DQ6ZTN6 518 aa12.14□□□□□ -0.47
YBX3-218ENST00000546298 NLRP10Q86W26 655 aa12.14□□□□□ -0.47
YBX3-218ENST00000546298 PLBD2Q8NHP8 589 aa12.14□□□□□ -0.47
YBX3-218ENST00000546298 JDP2Q8WYK2 163 aa12.14□□□□□ -0.47
YBX3-218ENST00000546298 PSMD1Q99460 953 aa12.14□□□□□ -0.47
YBX3-218ENST00000546298 TRMT112Q9UI30 125 aaKnown RBP12.14□□□□□ -0.47
YBX3-218ENST00000546298 KDM3BQ7LBC6 1761 aa12.14□□□□□ -0.47
YBX3-218ENST00000546298 BCORQ6W2J9 1755 aa12.13□□□□□ -0.47
YBX3-218ENST00000546298 ZNF316A6NFI3 1004 aaPredicted RBP12.13□□□□□ -0.47
YBX3-218ENST00000546298 DDNO94850 711 aaPredicted RBP12.13□□□□□ -0.47
YBX3-218ENST00000546298 IARSP41252 1262 aaKnown RBP12.13□□□□□ -0.47
YBX3-218ENST00000546298 SH3TC1Q8TE82 1336 aa12.12□□□□□ -0.47
YBX3-218ENST00000546298 UTRNP46939 3433 aa12.12□□□□□ -0.47
YBX3-218ENST00000546298 POTECB2RU33 542 aa12.12□□□□□ -0.47
YBX3-218ENST00000546298 PPEF1O14829 653 aaPredicted RBP12.12□□□□□ -0.47
YBX3-218ENST00000546298 ANP32CO43423 234 aa12.12□□□□□ -0.47
YBX3-218ENST00000546298 BBOX1O75936 387 aa12.12□□□□□ -0.47
YBX3-218ENST00000546298 OLFM4Q6UX06 510 aa12.12□□□□□ -0.47
YBX3-218ENST00000546298 L3MBTL3Q96JM7 780 aaPredicted RBP12.12□□□□□ -0.47
YBX3-218ENST00000546298 DLEC1Q9Y238 1755 aa12.12□□□□□ -0.47
YBX3-218ENST00000546298 ANKRD31Q8N7Z5 1873 aa12.11□□□□□ -0.47
YBX3-218ENST00000546298 LAMB4A4D0S4 1761 aa12.11□□□□□ -0.47
YBX3-218ENST00000546298 EIF6P56537 245 aaKnown RBP12.11□□□□□ -0.47
YBX3-218ENST00000546298 GOLGA2Q08379 1002 aa12.11□□□□□ -0.47
YBX3-218ENST00000546298 DDX46Q7L014 1031 aaKnown RBP12.11□□□□□ -0.47
YBX3-218ENST00000546298 DLG5Q8TDM6 1919 aa12.11□□□□□ -0.47
YBX3-218ENST00000546298 FZD9O00144 591 aa12.1□□□□□ -0.47
YBX3-218ENST00000546298 ELL2O00472 640 aaPredicted RBP12.1□□□□□ -0.47
YBX3-218ENST00000546298 TCERG1O14776 1098 aaKnown RBP12.1□□□□□ -0.47
YBX3-218ENST00000546298 HCLS1P14317 486 aaPredicted RBP12.1□□□□□ -0.47
YBX3-218ENST00000546298 HSP90B1P14625 803 aaKnown RBP12.1□□□□□ -0.47
YBX3-218ENST00000546298 TRIM28Q13263 835 aaKnown RBP12.1□□□□□ -0.47
YBX3-218ENST00000546298 CCDC27Q2M243 656 aa12.1□□□□□ -0.47
YBX3-218ENST00000546298 CHADLQ6NUI6 762 aa12.1□□□□□ -0.47
YBX3-218ENST00000546298 C3orf67Q6ZVT6 689 aa12.1□□□□□ -0.47
YBX3-218ENST00000546298 LARGE2Q8N3Y3 721 aa12.1□□□□□ -0.47
YBX3-218ENST00000546298 DNAJC5GQ8N7S2 189 aa12.1□□□□□ -0.47
YBX3-218ENST00000546298 SUPT20HQ8NEM7 779 aa12.1□□□□□ -0.47
YBX3-218ENST00000546298 VPS33BQ9H267 617 aa12.1□□□□□ -0.47
YBX3-218ENST00000546298 ATP6V0A2Q9Y487 856 aa12.1□□□□□ -0.47
YBX3-218ENST00000546298 NCBP3Q53F19 620 aaKnown RBP12.09□□□□□ -0.47
YBX3-218ENST00000546298 CCDC30Q5VVM6 783 aa12.09□□□□□ -0.47
YBX3-218ENST00000546298 TMC4Q7Z404 712 aa12.09□□□□□ -0.47
YBX3-218ENST00000546298 RIC3Q7Z5B4 369 aa12.09□□□□□ -0.47
YBX3-218ENST00000546298 SP8Q8IXZ3 490 aa12.09□□□□□ -0.47
YBX3-218ENST00000546298 GPC2Q8N158 579 aa12.09□□□□□ -0.47
YBX3-218ENST00000546298 ISCA1Q9BUE6 129 aa12.09□□□□□ -0.47
YBX3-218ENST00000546298 MRS2Q9HD23 443 aa12.09□□□□□ -0.47
YBX3-218ENST00000546298 HACL1Q9UJ83 578 aa12.09□□□□□ -0.47
YBX3-218ENST00000546298 SLX4Q8IY92 1834 aa12.09□□□□□ -0.47
YBX3-218ENST00000546298 DDX58O95786 925 aaKnown RBP12.08□□□□□ -0.48
YBX3-218ENST00000546298 GRAPQ13588 217 aa12.08□□□□□ -0.48
YBX3-218ENST00000546298 PNMA8AQ86V59 439 aaPredicted RBP12.08□□□□□ -0.48
YBX3-218ENST00000546298 LDHDQ86WU2 507 aa12.08□□□□□ -0.48
YBX3-218ENST00000546298 NIM1KQ8IY84 436 aa12.08□□□□□ -0.48
YBX3-218ENST00000546298 GRAPLQ8TC17 118 aaPredicted RBP12.08□□□□□ -0.48
YBX3-218ENST00000546298 KLRG1Q96E93 195 aa12.08□□□□□ -0.48
YBX3-218ENST00000546298 TAF1DQ9H5J8 278 aaPredicted RBP12.08□□□□□ -0.48
YBX3-218ENST00000546298 COL11A2P13942 1736 aaPredicted RBP12.08□□□□□ -0.48
YBX3-218ENST00000546298 ABCC4O15439 1325 aa12.08□□□□□ -0.48
YBX3-218ENST00000546298 ZNF541Q9H0D2 1346 aa12.08□□□□□ -0.48
YBX3-218ENST00000546298 ATP5J2-PTCD1G3V325 749 aa12.07□□□□□ -0.48
YBX3-218ENST00000546298 PPIP5K2O43314 1243 aa12.07□□□□□ -0.48
YBX3-218ENST00000546298 SBF1O95248 1867 aa12.07□□□□□ -0.48
YBX3-218ENST00000546298 SF3B3Q15393 1217 aaKnown RBP12.07□□□□□ -0.48
YBX3-218ENST00000546298 CCDC184Q52MB2 194 aa12.07□□□□□ -0.48
YBX3-218ENST00000546298 DPP8Q6V1X1 898 aaPredicted RBP12.07□□□□□ -0.48
YBX3-218ENST00000546298 MPNDQ8N594 471 aa12.07□□□□□ -0.48
YBX3-218ENST00000546298 C8orf58Q8NAV2 365 aa12.07□□□□□ -0.48
YBX3-218ENST00000546298 FAM89AQ96GI7 184 aa12.07□□□□□ -0.48
YBX3-218ENST00000546298 LMOD1P29536 600 aaPredicted RBP12.06□□□□□ -0.48
YBX3-218ENST00000546298 EPHX2P34913 555 aa12.06□□□□□ -0.48
YBX3-218ENST00000546298 HTRA3P83110 453 aa12.06□□□□□ -0.48
YBX3-218ENST00000546298 WWC1Q8IX03 1113 aa12.06□□□□□ -0.48
YBX3-218ENST00000546298 STK31Q9BXU1 1019 aa12.06□□□□□ -0.48
YBX3-218ENST00000546298 RTFDC1Q9BY42 306 aaPredicted RBP12.06□□□□□ -0.48
YBX3-218ENST00000546298 CLEC11AQ9Y240 323 aa12.06□□□□□ -0.48
YBX3-218ENST00000546298 GJA3Q9Y6H8 435 aa12.06□□□□□ -0.48
YBX3-218ENST00000546298 TNRC6CQ9HCJ0 1690 aaKnown RBP12.06□□□□□ -0.48
YBX3-218ENST00000546298 SNED1Q8TER0 1413 aa12.05□□□□□ -0.48
YBX3-218ENST00000546298 IRS4O14654 1257 aaPredicted RBP12.05□□□□□ -0.48
YBX3-218ENST00000546298 EAPPQ56P03 285 aaPredicted RBP12.05□□□□□ -0.48
YBX3-218ENST00000546298 ZBTB38Q8NAP3 1195 aaPredicted RBP12.05□□□□□ -0.48
YBX3-218ENST00000546298 CCDC191Q8NCU4 936 aa12.05□□□□□ -0.48
YBX3-218ENST00000546298 PHAXQ9H814 394 aaKnown RBP12.05□□□□□ -0.48
YBX3-218ENST00000546298 ZNRF3Q9ULT6 936 aa12.05□□□□□ -0.48
YBX3-218ENST00000546298 IL16Q14005 1332 aa12.05□□□□□ -0.48
YBX3-218ENST00000546298 GOLGB1Q14789 3259 aaKnown RBP12.05□□□□□ -0.48
YBX3-218ENST00000546298 FER1L6Q2WGJ9 1857 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms