RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 HIRAP54198 1017 aaPredicted RBP21.05■□□□□ 0.96
CLSTN3-216ENST00000545663 KIF23Q02241 960 aaPredicted RBP21.05■□□□□ 0.96
CLSTN3-216ENST00000545663 ZNF790Q6PG37 636 aa21.05■□□□□ 0.96
CLSTN3-216ENST00000545663 NBPF15Q8N660 670 aa21.05■□□□□ 0.96
CLSTN3-216ENST00000545663 POLR3GLQ9BT43 218 aa21.05■□□□□ 0.96
CLSTN3-216ENST00000545663 PGAP2Q9UHJ9 254 aa21.05■□□□□ 0.96
CLSTN3-216ENST00000545663 CTU1Q7Z7A3 348 aaKnown RBP21.04■□□□□ 0.96
CLSTN3-216ENST00000545663 GCC1Q96CN9 775 aa21.03■□□□□ 0.96
CLSTN3-216ENST00000545663 SAGE1Q9NXZ1 904 aa21.03■□□□□ 0.96
CLSTN3-216ENST00000545663 NIP7Q9Y221 180 aaKnown RBP eCLIP21.03■□□□□ 0.96
CLSTN3-216ENST00000545663 TCERG1O14776 1098 aaKnown RBP21.02■□□□□ 0.96
CLSTN3-216ENST00000545663 GMPSP49915 693 aaPredicted RBP21.02■□□□□ 0.96
CLSTN3-216ENST00000545663 CLEC4GQ6UXB4 293 aa21.02■□□□□ 0.96
CLSTN3-216ENST00000545663 KCNQ3O43525 872 aa21.01■□□□□ 0.95
CLSTN3-216ENST00000545663 USP48Q86UV5 1035 aa21.01■□□□□ 0.95
CLSTN3-216ENST00000545663 NIM1KQ8IY84 436 aa21.01■□□□□ 0.95
CLSTN3-216ENST00000545663 CXCL9Q07325 125 aa21■□□□□ 0.95
CLSTN3-216ENST00000545663 CDC37L1Q7L3B6 337 aa21■□□□□ 0.95
CLSTN3-216ENST00000545663 TRPM4Q8TD43 1214 aa21■□□□□ 0.95
CLSTN3-216ENST00000545663 USP16Q9Y5T5 823 aa21■□□□□ 0.95
CLSTN3-216ENST00000545663 NPC1L1Q9UHC9 1359 aa20.99■□□□□ 0.95
CLSTN3-216ENST00000545663 SHTN1A0MZ66 631 aa20.99■□□□□ 0.95
CLSTN3-216ENST00000545663 PRAMEF22A3QJZ6 481 aa20.99■□□□□ 0.95
CLSTN3-216ENST00000545663 AOC3Q16853 763 aa20.99■□□□□ 0.95
CLSTN3-216ENST00000545663 RGMBQ6NW40 437 aa20.99■□□□□ 0.95
CLSTN3-216ENST00000545663 MORC1Q86VD1 984 aa20.99■□□□□ 0.95
CLSTN3-216ENST00000545663 IL17REQ8NFR9 667 aa20.99■□□□□ 0.95
CLSTN3-216ENST00000545663 CRY2Q49AN0 593 aa20.98■□□□□ 0.95
CLSTN3-216ENST00000545663 CC2D2BQ6DHV5 1058 aa20.98■□□□□ 0.95
CLSTN3-216ENST00000545663 FMNL2Q96PY5 1086 aa20.98■□□□□ 0.95
CLSTN3-216ENST00000545663 ZNF652Q9Y2D9 606 aa20.98■□□□□ 0.95
CLSTN3-216ENST00000545663 PPIP5K2O43314 1243 aa20.97■□□□□ 0.95
CLSTN3-216ENST00000545663 GTF2E1P29083 439 aaPredicted RBP20.97■□□□□ 0.95
CLSTN3-216ENST00000545663 NUTM1Q86Y26 1132 aa20.97■□□□□ 0.95
CLSTN3-216ENST00000545663 CSRNP1Q96S65 589 aa20.97■□□□□ 0.95
CLSTN3-216ENST00000545663 ABCC12Q96J65 1359 aa20.97■□□□□ 0.95
CLSTN3-216ENST00000545663 TEFQ10587 303 aa20.96■□□□□ 0.95
CLSTN3-216ENST00000545663 HLFQ16534 295 aa20.96■□□□□ 0.95
CLSTN3-216ENST00000545663 ZC3H15Q8WU90 426 aaKnown RBP20.96■□□□□ 0.95
CLSTN3-216ENST00000545663 PANK3Q9H999 370 aa20.96■□□□□ 0.95
CLSTN3-216ENST00000545663 ZNF157P51786 506 aaPredicted RBP20.95■□□□□ 0.94
CLSTN3-216ENST00000545663 FXR1P51114 621 aaKnown RBP eCLIP20.94■□□□□ 0.94
CLSTN3-216ENST00000545663 CCDC102AQ96A19 550 aa20.94■□□□□ 0.94
CLSTN3-216ENST00000545663 ZNRF3Q9ULT6 936 aa20.94■□□□□ 0.94
CLSTN3-216ENST00000545663 SZT2Q5T011 3432 aa20.93■□□□□ 0.94
CLSTN3-216ENST00000545663 RAD17O75943 681 aa20.93■□□□□ 0.94
CLSTN3-216ENST00000545663 A0A0C4DFX4 3053 aa20.93■□□□□ 0.94
CLSTN3-216ENST00000545663 NBPF26B4DH59 902 aa20.92■□□□□ 0.94
CLSTN3-216ENST00000545663 HOXA10P31260 410 aaPredicted RBP20.92■□□□□ 0.94
CLSTN3-216ENST00000545663 NBPF10Q6P3W6 841 aaKnown RBP20.92■□□□□ 0.94
CLSTN3-216ENST00000545663 RPGRQ92834 1020 aaKnown RBP20.92■□□□□ 0.94
CLSTN3-216ENST00000545663 BCL2L13Q9BXK5 485 aa20.92■□□□□ 0.94
CLSTN3-216ENST00000545663 GBA2Q9HCG7 927 aaPredicted RBP20.92■□□□□ 0.94
CLSTN3-216ENST00000545663 PPEF1O14829 653 aaPredicted RBP20.91■□□□□ 0.94
CLSTN3-216ENST00000545663 CNOT7Q9UIV1 285 aaKnown RBP20.91■□□□□ 0.94
CLSTN3-216ENST00000545663 GRIPAP1Q4V328 841 aa20.9■□□□□ 0.94
CLSTN3-216ENST00000545663 ADM5C9JUS6 153 aa20.89■□□□□ 0.93
CLSTN3-216ENST00000545663 C3orf67Q6ZVT6 689 aa20.89■□□□□ 0.93
CLSTN3-216ENST00000545663 C2orf69Q8N8R5 385 aa20.89■□□□□ 0.93
CLSTN3-216ENST00000545663 GNAT3A8MTJ3 354 aa20.88■□□□□ 0.93
CLSTN3-216ENST00000545663 SLC10A3P09131 477 aa20.88■□□□□ 0.93
CLSTN3-216ENST00000545663 PKN2Q16513 984 aaKnown RBP20.88■□□□□ 0.93
CLSTN3-216ENST00000545663 SAMD7Q7Z3H4 446 aa20.88■□□□□ 0.93
CLSTN3-216ENST00000545663 KRT26Q7Z3Y9 468 aa20.88■□□□□ 0.93
CLSTN3-216ENST00000545663 HDAC9Q9UKV0 1011 aa20.88■□□□□ 0.93
CLSTN3-216ENST00000545663 HTTP42858 3142 aa20.88■□□□□ 0.93
CLSTN3-216ENST00000545663 BTBD11A6QL63 1104 aa20.87■□□□□ 0.93
CLSTN3-216ENST00000545663 EGFRP00533 1210 aa20.87■□□□□ 0.93
CLSTN3-216ENST00000545663 ZNF296Q8WUU4 475 aaPredicted RBP20.87■□□□□ 0.93
CLSTN3-216ENST00000545663 CRAMP1Q96RY5 1269 aa20.87■□□□□ 0.93
CLSTN3-216ENST00000545663 AKAP11Q9UKA4 1901 aa20.86■□□□□ 0.93
CLSTN3-216ENST00000545663 KIF7Q2M1P5 1343 aa20.86■□□□□ 0.93
CLSTN3-216ENST00000545663 TBC1D8O95759 1140 aa20.86■□□□□ 0.93
CLSTN3-216ENST00000545663 MICALL2Q8IY33 904 aa20.86■□□□□ 0.93
CLSTN3-216ENST00000545663 RBM17Q96I25 401 aaKnown RBP20.86■□□□□ 0.93
CLSTN3-216ENST00000545663 ZBTB12Q9Y330 459 aaPredicted RBP20.86■□□□□ 0.93
CLSTN3-216ENST00000545663 SIPA1L3O60292 1781 aaPredicted RBP20.86■□□□□ 0.93
CLSTN3-216ENST00000545663 CENPFP49454 3210 aa20.86■□□□□ 0.93
CLSTN3-216ENST00000545663 H7C1D1 291 aa20.85■□□□□ 0.93
CLSTN3-216ENST00000545663 CDHR2Q9BYE9 1310 aa20.84■□□□□ 0.93
CLSTN3-216ENST00000545663 TNIP1Q15025 636 aa20.84■□□□□ 0.93
CLSTN3-216ENST00000545663 TBC1D10BQ4KMP7 808 aaPredicted RBP20.84■□□□□ 0.93
CLSTN3-216ENST00000545663 NYXQ9GZU5 481 aa20.84■□□□□ 0.93
CLSTN3-216ENST00000545663 ATP6V0A2Q9Y487 856 aa20.84■□□□□ 0.93
CLSTN3-216ENST00000545663 YDJCA8MPS7 323 aa20.83■□□□□ 0.93
CLSTN3-216ENST00000545663 RGL2O15211 777 aa20.83■□□□□ 0.93
CLSTN3-216ENST00000545663 VPS33BQ9H267 617 aa20.83■□□□□ 0.93
CLSTN3-216ENST00000545663 RIC1Q4ADV7 1423 aa20.83■□□□□ 0.93
CLSTN3-216ENST00000545663 SNRPA1P09661 255 aaKnown RBP20.82■□□□□ 0.92
CLSTN3-216ENST00000545663 GPTP24298 496 aa20.82■□□□□ 0.92
CLSTN3-216ENST00000545663 RBM26Q5T8P6 1007 aaKnown RBP20.82■□□□□ 0.92
CLSTN3-216ENST00000545663 NGEFQ8N5V2 710 aa20.82■□□□□ 0.92
CLSTN3-216ENST00000545663 RTFDC1Q9BY42 306 aaPredicted RBP20.82■□□□□ 0.92
CLSTN3-216ENST00000545663 POTEFA5A3E0 1075 aa20.81■□□□□ 0.92
CLSTN3-216ENST00000545663 DLL1O00548 723 aa20.81■□□□□ 0.92
CLSTN3-216ENST00000545663 SUSD4Q5VX71 490 aa20.81■□□□□ 0.92
CLSTN3-216ENST00000545663 FBXO46Q6PJ61 603 aaPredicted RBP20.81■□□□□ 0.92
CLSTN3-216ENST00000545663 RASAL3Q86YV0 1011 aa20.81■□□□□ 0.92
CLSTN3-216ENST00000545663 BRCA2P51587 3418 aa20.81■□□□□ 0.92
CLSTN3-216ENST00000545663 KIAA2012Q0VF49 1180 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms