RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 FAM177BA6PVY3 158 aa24.49■■□□□ 1.51
DDX55-211ENST00000544429 ERFEQ4G0M1 354 aa24.49■■□□□ 1.51
DDX55-211ENST00000544429 NUTM1Q86Y26 1132 aa24.49■■□□□ 1.51
DDX55-211ENST00000544429 UTP14AQ9BVJ6 771 aaKnown RBP24.49■■□□□ 1.51
DDX55-211ENST00000544429 LAMB2P55268 1798 aa24.48■■□□□ 1.51
DDX55-211ENST00000544429 SLC10A5Q5PT55 438 aa24.48■■□□□ 1.51
DDX55-211ENST00000544429 DDX60Q8IY21 1712 aaKnown RBP24.48■■□□□ 1.51
DDX55-211ENST00000544429 PIM2Q9P1W9 311 aa24.48■■□□□ 1.51
DDX55-211ENST00000544429 ATP5J2-PTCD1G3V325 749 aa24.47■■□□□ 1.51
DDX55-211ENST00000544429 H0YIN7 160 aa24.47■■□□□ 1.51
DDX55-211ENST00000544429 SRGNP10124 158 aa24.47■■□□□ 1.51
DDX55-211ENST00000544429 ALDH1L2Q3SY69 923 aa24.47■■□□□ 1.51
DDX55-211ENST00000544429 CRY2Q49AN0 593 aa24.47■■□□□ 1.51
DDX55-211ENST00000544429 C2CD5Q86YS7 1000 aa24.47■■□□□ 1.51
DDX55-211ENST00000544429 MRPL50Q8N5N7 158 aaKnown RBP24.47■■□□□ 1.51
DDX55-211ENST00000544429 SSH1Q8WYL5 1049 aa24.47■■□□□ 1.51
DDX55-211ENST00000544429 NPHP1O15259 732 aa24.46■■□□□ 1.51
DDX55-211ENST00000544429 GPR162Q16538 588 aa24.46■■□□□ 1.51
DDX55-211ENST00000544429 MYD88Q99836 296 aa24.46■■□□□ 1.51
DDX55-211ENST00000544429 IGKV5-2P06315 115 aa24.45■■□□□ 1.5
DDX55-211ENST00000544429 FKBP5Q13451 457 aaPredicted RBP24.45■■□□□ 1.5
DDX55-211ENST00000544429 CCDC191Q8NCU4 936 aa24.45■■□□□ 1.5
DDX55-211ENST00000544429 CHD4Q14839 1912 aa24.45■■□□□ 1.5
DDX55-211ENST00000544429 DCAF8L1A6NGE4 600 aa24.44■■□□□ 1.5
DDX55-211ENST00000544429 GTF2E1P29083 439 aaPredicted RBP24.44■■□□□ 1.5
DDX55-211ENST00000544429 SYNE4Q8N205 404 aa24.44■■□□□ 1.5
DDX55-211ENST00000544429 SH3TC1Q8TE82 1336 aa24.43■■□□□ 1.5
DDX55-211ENST00000544429 SLX4Q8IY92 1834 aa24.43■■□□□ 1.5
DDX55-211ENST00000544429 BRPF1P55201 1214 aaPredicted RBP24.43■■□□□ 1.5
DDX55-211ENST00000544429 STYK1Q6J9G0 422 aa24.43■■□□□ 1.5
DDX55-211ENST00000544429 DNAAF4Q8WXU2 420 aa24.43■■□□□ 1.5
DDX55-211ENST00000544429 TRMT112Q9UI30 125 aaKnown RBP24.43■■□□□ 1.5
DDX55-211ENST00000544429 CACNA1SQ13698 1873 aa24.43■■□□□ 1.5
DDX55-211ENST00000544429 GRIN3BO60391 1043 aa24.42■■□□□ 1.5
DDX55-211ENST00000544429 DALRD3Q5D0E6 543 aaKnown RBP24.42■■□□□ 1.5
DDX55-211ENST00000544429 MASTLQ96GX5 879 aa24.42■■□□□ 1.5
DDX55-211ENST00000544429 WWC3Q9ULE0 1092 aa24.42■■□□□ 1.5
DDX55-211ENST00000544429 C3orf67Q6ZVT6 689 aa24.41■■□□□ 1.5
DDX55-211ENST00000544429 ZBTB38Q8NAP3 1195 aaPredicted RBP24.41■■□□□ 1.5
DDX55-211ENST00000544429 BCS1LQ9Y276 419 aa24.41■■□□□ 1.5
DDX55-211ENST00000544429 NEURL1BA8MQ27 555 aa24.4■■□□□ 1.5
DDX55-211ENST00000544429 NPR1P16066 1061 aa24.4■■□□□ 1.5
DDX55-211ENST00000544429 HOXA10P31260 410 aaPredicted RBP24.4■■□□□ 1.5
DDX55-211ENST00000544429 RARSP54136 660 aaKnown RBP24.4■■□□□ 1.5
DDX55-211ENST00000544429 PELP1Q8IZL8 1130 aaKnown RBP24.4■■□□□ 1.5
DDX55-211ENST00000544429 TTLL6Q8N841 843 aa24.4■■□□□ 1.5
DDX55-211ENST00000544429 CWC25Q9NXE8 425 aaPredicted RBP24.4■■□□□ 1.5
DDX55-211ENST00000544429 PTPRCP08575 1304 aa24.39■■□□□ 1.5
DDX55-211ENST00000544429 F6X3S4 739 aa24.39■■□□□ 1.49
DDX55-211ENST00000544429 NEXNQ0ZGT2 675 aa24.39■■□□□ 1.49
DDX55-211ENST00000544429 LINS1Q8NG48 757 aa24.39■■□□□ 1.49
DDX55-211ENST00000544429 FAM89AQ96GI7 184 aa24.39■■□□□ 1.49
DDX55-211ENST00000544429 PCCAP05165 728 aaPredicted RBP24.38■■□□□ 1.49
DDX55-211ENST00000544429 CWF19L2Q2TBE0 894 aaKnown RBP24.38■■□□□ 1.49
DDX55-211ENST00000544429 CNKSR1Q969H4 720 aa24.38■■□□□ 1.49
DDX55-211ENST00000544429 BCL2L13Q9BXK5 485 aa24.38■■□□□ 1.49
DDX55-211ENST00000544429 HCLS1P14317 486 aaPredicted RBP24.37■■□□□ 1.49
DDX55-211ENST00000544429 BEND3Q5T5X7 828 aa24.37■■□□□ 1.49
DDX55-211ENST00000544429 ZNF622Q969S3 477 aaKnown RBP eCLIP24.37■■□□□ 1.49
DDX55-211ENST00000544429 SMC4Q9NTJ3 1288 aa24.37■■□□□ 1.49
DDX55-211ENST00000544429 NLRP3Q96P20 1036 aa24.36■■□□□ 1.49
DDX55-211ENST00000544429 FER1L6Q2WGJ9 1857 aa24.36■■□□□ 1.49
DDX55-211ENST00000544429 MYH3P11055 1940 aa24.35■■□□□ 1.49
DDX55-211ENST00000544429 GCKRQ14397 625 aa24.35■■□□□ 1.49
DDX55-211ENST00000544429 PRPF40BQ6NWY9 871 aaKnown RBP24.35■■□□□ 1.49
DDX55-211ENST00000544429 C7orf43Q8WVR3 580 aa24.35■■□□□ 1.49
DDX55-211ENST00000544429 CDHR2Q9BYE9 1310 aa24.35■■□□□ 1.49
DDX55-211ENST00000544429 H7C1W4 665 aa24.34■■□□□ 1.49
DDX55-211ENST00000544429 SF3B3Q15393 1217 aaKnown RBP24.34■■□□□ 1.49
DDX55-211ENST00000544429 CRAMP1Q96RY5 1269 aa24.34■■□□□ 1.49
DDX55-211ENST00000544429 SBF1O95248 1867 aa24.33■■□□□ 1.49
DDX55-211ENST00000544429 IRS4O14654 1257 aaPredicted RBP24.33■■□□□ 1.49
DDX55-211ENST00000544429 CASP7P55210 303 aa24.33■■□□□ 1.49
DDX55-211ENST00000544429 TAF1P21675 1872 aa24.32■■□□□ 1.48
DDX55-211ENST00000544429 ALDH1B1P30837 517 aa24.32■■□□□ 1.48
DDX55-211ENST00000544429 RTL5Q5HYW3 569 aaPredicted RBP24.32■■□□□ 1.48
DDX55-211ENST00000544429 SNED1Q8TER0 1413 aa24.32■■□□□ 1.48
DDX55-211ENST00000544429 RPGRQ92834 1020 aaKnown RBP24.31■■□□□ 1.48
DDX55-211ENST00000544429 ALDH1L1O75891 902 aa24.3■■□□□ 1.48
DDX55-211ENST00000544429 COL4A1P02462 1669 aa24.3■■□□□ 1.48
DDX55-211ENST00000544429 HSP90B1P14625 803 aaKnown RBP24.29■■□□□ 1.48
DDX55-211ENST00000544429 ARHGAP45Q92619 1136 aa24.29■■□□□ 1.48
DDX55-211ENST00000544429 JARID2Q92833 1246 aaPredicted RBP24.29■■□□□ 1.48
DDX55-211ENST00000544429 RBM17Q96I25 401 aaKnown RBP24.29■■□□□ 1.48
DDX55-211ENST00000544429 NOB1Q9ULX3 412 aaKnown RBP24.29■■□□□ 1.48
DDX55-211ENST00000544429 KIF16BQ96L93 1317 aa24.29■■□□□ 1.48
DDX55-211ENST00000544429 PDE8AO60658 829 aa24.28■■□□□ 1.48
DDX55-211ENST00000544429 PLA2G12BQ9BX93 195 aa24.28■■□□□ 1.48
DDX55-211ENST00000544429 ABCC4O15439 1325 aa24.28■■□□□ 1.48
DDX55-211ENST00000544429 C21orf2O43822 256 aa24.27■■□□□ 1.48
DDX55-211ENST00000544429 BCAR3O75815 825 aa24.27■■□□□ 1.48
DDX55-211ENST00000544429 UBE3BQ7Z3V4 1068 aa24.27■■□□□ 1.48
DDX55-211ENST00000544429 SRCIN1Q9C0H9 1055 aa24.27■■□□□ 1.48
DDX55-211ENST00000544429 LRRC37AA6NMS7 1700 aa24.27■■□□□ 1.48
DDX55-211ENST00000544429 NFKBIEO00221 500 aa24.26■■□□□ 1.47
DDX55-211ENST00000544429 SLC4A10Q6U841 1118 aa24.26■■□□□ 1.47
DDX55-211ENST00000544429 ARHGAP27Q6ZUM4 889 aa24.26■■□□□ 1.47
DDX55-211ENST00000544429 UTYO14607 1347 aa24.26■■□□□ 1.47
DDX55-211ENST00000544429 CCDC88AQ3V6T2 1871 aa24.26■■□□□ 1.47
DDX55-211ENST00000544429 GRM8O00222 908 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms