RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 HINFPQ9BQA5 517 aa8.31□□□□□ -1.08
PRKDC-210ENST00000541488 M0R082 166 aa8.3□□□□□ -1.08
PRKDC-210ENST00000541488 DPYDQ12882 1025 aa8.3□□□□□ -1.08
PRKDC-210ENST00000541488 TEAD4Q15561 434 aa8.3□□□□□ -1.08
PRKDC-210ENST00000541488 LRRC69Q6ZNQ3 347 aa8.3□□□□□ -1.08
PRKDC-210ENST00000541488 C1orf216Q8TAB5 229 aa8.3□□□□□ -1.08
PRKDC-210ENST00000541488 ZNF417Q8TAU3 575 aa8.3□□□□□ -1.08
PRKDC-210ENST00000541488 ZNF587Q96SQ5 575 aaPredicted RBP8.3□□□□□ -1.08
PRKDC-210ENST00000541488 MDFIQ99750 246 aa8.3□□□□□ -1.08
PRKDC-210ENST00000541488 KRTAP4-2Q9BYR5 136 aa8.3□□□□□ -1.08
PRKDC-210ENST00000541488 VRTNQ9H8Y1 702 aa8.3□□□□□ -1.08
PRKDC-210ENST00000541488 ZDHHC3Q9NYG2 299 aa8.3□□□□□ -1.08
PRKDC-210ENST00000541488 USP17L15C9J2P7 530 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 USP17L10C9JJH3 530 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 USP17L13C9JLJ4 530 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 USP17L12C9JPN9 530 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 USP17L11C9JVI0 530 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 USP17L21D6R901 530 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 USP17L18D6R9N7 530 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 USP17L22D6RA61 530 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 USP17L17D6RBQ6 530 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 USP17L19D6RCP7 530 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 USP17L20D6RJB6 530 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 PPP1R12BO60237 982 aaPredicted RBP8.29□□□□□ -1.08
PRKDC-210ENST00000541488 ALAS2P22557 587 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 SEC13P55735 322 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 USP17L24Q0WX57 530 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 PTK7Q13308 1070 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 CFAP70Q5T0N1 1121 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 NGLY1Q96IV0 654 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 GTF3C3Q9Y5Q9 886 aa8.29□□□□□ -1.08
PRKDC-210ENST00000541488 C9orf172C9J069 976 aa8.28□□□□□ -1.08
PRKDC-210ENST00000541488 PSMA6P60900 246 aaKnown RBP8.28□□□□□ -1.08
PRKDC-210ENST00000541488 FZD5Q13467 585 aa8.28□□□□□ -1.08
PRKDC-210ENST00000541488 TXNRD3Q86VQ6 643 aa8.28□□□□□ -1.08
PRKDC-210ENST00000541488 RHPN1Q8TCX5 695 aa8.28□□□□□ -1.08
PRKDC-210ENST00000541488 SCG3Q8WXD2 468 aaKnown RBP8.28□□□□□ -1.08
PRKDC-210ENST00000541488 TP53INP1Q96A56 240 aa8.28□□□□□ -1.08
PRKDC-210ENST00000541488 NEUROD4Q9HD90 331 aa8.28□□□□□ -1.08
PRKDC-210ENST00000541488 CHMP3Q9Y3E7 222 aa8.28□□□□□ -1.08
PRKDC-210ENST00000541488 EML1O00423 815 aa8.27□□□□□ -1.09
PRKDC-210ENST00000541488 C21orf2O43822 256 aa8.27□□□□□ -1.09
PRKDC-210ENST00000541488 C8orf86Q6ZUL3 223 aa8.27□□□□□ -1.09
PRKDC-210ENST00000541488 HSH2DQ96JZ2 352 aa8.27□□□□□ -1.09
PRKDC-210ENST00000541488 PHACTR1Q9C0D0 580 aa8.27□□□□□ -1.09
PRKDC-210ENST00000541488 PRDM6Q9NQX0 595 aa8.27□□□□□ -1.09
PRKDC-210ENST00000541488 RNF112Q9ULX5 631 aa8.27□□□□□ -1.09
PRKDC-210ENST00000541488 ATAD2Q6PL18 1390 aa8.26□□□□□ -1.09
PRKDC-210ENST00000541488 SELPP16109 830 aa8.26□□□□□ -1.09
PRKDC-210ENST00000541488 ANKMY2Q8IV38 441 aa8.26□□□□□ -1.09
PRKDC-210ENST00000541488 ZMYND15Q9H091 742 aa8.26□□□□□ -1.09
PRKDC-210ENST00000541488 STRN4Q9NRL3 753 aa8.26□□□□□ -1.09
PRKDC-210ENST00000541488 ARID3CA6NKF2 412 aa8.25□□□□□ -1.09
PRKDC-210ENST00000541488 M0R2N6 131 aa8.25□□□□□ -1.09
PRKDC-210ENST00000541488 ALBP02768 609 aa8.25□□□□□ -1.09
PRKDC-210ENST00000541488 FAM157BP0CG42 384 aa8.25□□□□□ -1.09
PRKDC-210ENST00000541488 NID1P14543 1247 aa8.25□□□□□ -1.09
PRKDC-210ENST00000541488 SYT9Q86SS6 491 aa8.25□□□□□ -1.09
PRKDC-210ENST00000541488 STARD13Q9Y3M8 1113 aa8.25□□□□□ -1.09
PRKDC-210ENST00000541488 FAM196BA6NMK8 535 aa8.24□□□□□ -1.09
PRKDC-210ENST00000541488 MICALL1Q8N3F8 863 aa8.23□□□□□ -1.09
PRKDC-210ENST00000541488 ZNF280CQ8ND82 737 aa8.23□□□□□ -1.09
PRKDC-210ENST00000541488 MARK1Q9P0L2 795 aa8.23□□□□□ -1.09
PRKDC-210ENST00000541488 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.22□□□□□ -1.09
PRKDC-210ENST00000541488 ALDH16A1Q8IZ83 802 aa8.22□□□□□ -1.09
PRKDC-210ENST00000541488 C7orf43Q8WVR3 580 aa8.22□□□□□ -1.09
PRKDC-210ENST00000541488 ARXQ96QS3 562 aa8.22□□□□□ -1.09
PRKDC-210ENST00000541488 PCMTD2Q9NV79 361 aa8.22□□□□□ -1.09
PRKDC-210ENST00000541488 ADARB2-AS1A8MUL3 147 aa8.21□□□□□ -1.1
PRKDC-210ENST00000541488 SFSWAPQ12872 951 aaKnown RBP8.21□□□□□ -1.1
PRKDC-210ENST00000541488 SHISA2Q6UWI4 295 aa8.21□□□□□ -1.1
PRKDC-210ENST00000541488 RAB44Q7Z6P3 723 aaPredicted RBP8.21□□□□□ -1.1
PRKDC-210ENST00000541488 CEP63Q96MT8 703 aa8.21□□□□□ -1.1
PRKDC-210ENST00000541488 C2orf49Q9BVC5 232 aaPredicted RBP8.21□□□□□ -1.1
PRKDC-210ENST00000541488 SSBP4Q9BWG4 385 aaPredicted RBP8.21□□□□□ -1.1
PRKDC-210ENST00000541488 SIN3BO75182 1162 aa8.2□□□□□ -1.1
PRKDC-210ENST00000541488 IRAK1P51617 712 aa8.2□□□□□ -1.1
PRKDC-210ENST00000541488 TRAPPC3LQ5T215 181 aa8.2□□□□□ -1.1
PRKDC-210ENST00000541488 FAM200AQ8TCP9 573 aa8.2□□□□□ -1.1
PRKDC-210ENST00000541488 LENG1Q96BZ8 264 aaPredicted RBP8.2□□□□□ -1.1
PRKDC-210ENST00000541488 SUSD3Q96L08 255 aa8.2□□□□□ -1.1
PRKDC-210ENST00000541488 NOVA2Q9UNW9 492 aaKnown RBP8.2□□□□□ -1.1
PRKDC-210ENST00000541488 EFSO43281 561 aa8.19□□□□□ -1.1
PRKDC-210ENST00000541488 NRG1Q02297 640 aaPredicted RBP8.19□□□□□ -1.1
PRKDC-210ENST00000541488 HIRAP54198 1017 aaPredicted RBP8.18□□□□□ -1.1
PRKDC-210ENST00000541488 LAMC2Q13753 1193 aa8.18□□□□□ -1.1
PRKDC-210ENST00000541488 SAMD5Q5TGI4 173 aa8.18□□□□□ -1.1
PRKDC-210ENST00000541488 C1orf53Q5VUE5 145 aa8.18□□□□□ -1.1
PRKDC-210ENST00000541488 BRD7Q9NPI1 651 aa8.18□□□□□ -1.1
PRKDC-210ENST00000541488 RNF114Q9Y508 228 aa8.18□□□□□ -1.1
PRKDC-210ENST00000541488 A0A0A0MRY4 1105 aa8.17□□□□□ -1.1
PRKDC-210ENST00000541488 PRIMPOLQ96LW4 560 aa8.17□□□□□ -1.1
PRKDC-210ENST00000541488 SLC30A3Q99726 388 aa8.17□□□□□ -1.1
PRKDC-210ENST00000541488 PRMT3O60678 531 aa8.16□□□□□ -1.1
PRKDC-210ENST00000541488 TAL1P17542 331 aaPredicted RBP8.16□□□□□ -1.1
PRKDC-210ENST00000541488 IGFBP4P22692 258 aa8.16□□□□□ -1.1
PRKDC-210ENST00000541488 POTEAQ6S8J7 498 aa8.16□□□□□ -1.1
PRKDC-210ENST00000541488 STK32AQ8WU08 396 aa8.16□□□□□ -1.1
PRKDC-210ENST00000541488 TNFRSF25Q93038 417 aa8.16□□□□□ -1.1
PRKDC-210ENST00000541488 CCDC97Q96F63 343 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 190.9 ms