RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 PLBD2Q8NHP8 589 aa14.97□□□□□ -0.01
RTN3-209ENST00000538995 UTP14AQ9BVJ6 771 aaKnown RBP14.97□□□□□ -0.01
RTN3-209ENST00000538995 SBF1O95248 1867 aa14.96□□□□□ -0.01
RTN3-209ENST00000538995 HOXA10P31260 410 aaPredicted RBP14.96□□□□□ -0.01
RTN3-209ENST00000538995 PRELPP51888 382 aa14.96□□□□□ -0.01
RTN3-209ENST00000538995 NLRP10Q86W26 655 aa14.96□□□□□ -0.01
RTN3-209ENST00000538995 SLX4Q8IY92 1834 aa14.96□□□□□ -0.01
RTN3-209ENST00000538995 FER1L6Q2WGJ9 1857 aa14.95□□□□□ -0.02
RTN3-209ENST00000538995 SLC10A5Q5PT55 438 aa14.95□□□□□ -0.02
RTN3-209ENST00000538995 ANKRD13DQ6ZTN6 518 aa14.95□□□□□ -0.02
RTN3-209ENST00000538995 RPGRQ92834 1020 aaKnown RBP14.95□□□□□ -0.02
RTN3-209ENST00000538995 ZNF219Q9P2Y4 722 aaPredicted RBP14.95□□□□□ -0.02
RTN3-209ENST00000538995 ANKRD36CQ5JPF3 1778 aa14.95□□□□□ -0.02
RTN3-209ENST00000538995 CCDC30Q5VVM6 783 aa14.94□□□□□ -0.02
RTN3-209ENST00000538995 CC2D2BQ6DHV5 1058 aa14.94□□□□□ -0.02
RTN3-209ENST00000538995 RTKN2Q8IZC4 609 aa14.94□□□□□ -0.02
RTN3-209ENST00000538995 C8orf58Q8NAV2 365 aa14.94□□□□□ -0.02
RTN3-209ENST00000538995 NLRP3Q96P20 1036 aa14.94□□□□□ -0.02
RTN3-209ENST00000538995 CRAMP1Q96RY5 1269 aa14.94□□□□□ -0.02
RTN3-209ENST00000538995 NMRK2Q9NPI5 230 aa14.94□□□□□ -0.02
RTN3-209ENST00000538995 TIAM2Q8IVF5 1701 aa14.93□□□□□ -0.02
RTN3-209ENST00000538995 GLTPD2A6NH11 291 aa14.93□□□□□ -0.02
RTN3-209ENST00000538995 FKBP4Q02790 459 aaKnown RBP eCLIP14.93□□□□□ -0.02
RTN3-209ENST00000538995 GOLGA2Q08379 1002 aa14.93□□□□□ -0.02
RTN3-209ENST00000538995 GRIPAP1Q4V328 841 aa14.93□□□□□ -0.02
RTN3-209ENST00000538995 RBM17Q96I25 401 aaKnown RBP14.93□□□□□ -0.02
RTN3-209ENST00000538995 SH3TC1Q8TE82 1336 aa14.92□□□□□ -0.02
RTN3-209ENST00000538995 SNED1Q8TER0 1413 aa14.92□□□□□ -0.02
RTN3-209ENST00000538995 SENP3-EIF4A1A0A087X0R7 540 aa14.92□□□□□ -0.02
RTN3-209ENST00000538995 ELL2O00472 640 aaPredicted RBP14.92□□□□□ -0.02
RTN3-209ENST00000538995 TOMM70O94826 608 aa14.92□□□□□ -0.02
RTN3-209ENST00000538995 TRIM28Q13263 835 aaKnown RBP14.92□□□□□ -0.02
RTN3-209ENST00000538995 WDR63Q8IWG1 891 aa14.92□□□□□ -0.02
RTN3-209ENST00000538995 TSR2Q969E8 191 aaKnown RBP14.92□□□□□ -0.02
RTN3-209ENST00000538995 ISCA1Q9BUE6 129 aa14.92□□□□□ -0.02
RTN3-209ENST00000538995 TRMT112Q9UI30 125 aaKnown RBP14.92□□□□□ -0.02
RTN3-209ENST00000538995 PSMD1Q99460 953 aa14.91□□□□□ -0.02
RTN3-209ENST00000538995 CACNA1SQ13698 1873 aa14.91□□□□□ -0.02
RTN3-209ENST00000538995 DDX58O95786 925 aaKnown RBP14.9□□□□□ -0.02
RTN3-209ENST00000538995 DPY19L2Q6NUT2 758 aa14.9□□□□□ -0.02
RTN3-209ENST00000538995 C3orf67Q6ZVT6 689 aa14.9□□□□□ -0.02
RTN3-209ENST00000538995 TSPYL6Q8N831 410 aa14.9□□□□□ -0.02
RTN3-209ENST00000538995 RBM46Q8TBY0 533 aaKnown RBP14.9□□□□□ -0.02
RTN3-209ENST00000538995 FANCIQ9NVI1 1328 aa14.9□□□□□ -0.02
RTN3-209ENST00000538995 PPEF1O14829 653 aaPredicted RBP14.89□□□□□ -0.03
RTN3-209ENST00000538995 TWISTNBQ3B726 338 aaPredicted RBP14.89□□□□□ -0.03
RTN3-209ENST00000538995 RIC3Q7Z5B4 369 aa14.89□□□□□ -0.03
RTN3-209ENST00000538995 C16orf71Q8IYS4 520 aaPredicted RBP14.89□□□□□ -0.03
RTN3-209ENST00000538995 STK31Q9BXU1 1019 aa14.89□□□□□ -0.03
RTN3-209ENST00000538995 PHAXQ9H814 394 aaKnown RBP14.89□□□□□ -0.03
RTN3-209ENST00000538995 HCLS1P14317 486 aaPredicted RBP14.88□□□□□ -0.03
RTN3-209ENST00000538995 HSPA6P17066 643 aa14.88□□□□□ -0.03
RTN3-209ENST00000538995 OLFM4Q6UX06 510 aa14.88□□□□□ -0.03
RTN3-209ENST00000538995 FAM9BQ8IZU0 186 aa14.88□□□□□ -0.03
RTN3-209ENST00000538995 ABCC4O15439 1325 aa14.88□□□□□ -0.03
RTN3-209ENST00000538995 DICER1Q9UPY3 1922 aaKnown RBP14.88□□□□□ -0.03
RTN3-209ENST00000538995 ATP5J2-PTCD1G3V325 749 aa14.87□□□□□ -0.03
RTN3-209ENST00000538995 HSP90B1P14625 803 aaKnown RBP14.87□□□□□ -0.03
RTN3-209ENST00000538995 VEGFAP15692 232 aaPredicted RBP14.87□□□□□ -0.03
RTN3-209ENST00000538995 TMX4Q9H1E5 349 aaPredicted RBP14.87□□□□□ -0.03
RTN3-209ENST00000538995 RRAGCQ9HB90 399 aa14.87□□□□□ -0.03
RTN3-209ENST00000538995 ZNF277Q9NRM2 450 aaPredicted RBP14.87□□□□□ -0.03
RTN3-209ENST00000538995 WDR90Q96KV7 1748 aa14.86□□□□□ -0.03
RTN3-209ENST00000538995 BBOX1O75936 387 aa14.86□□□□□ -0.03
RTN3-209ENST00000538995 IARSP41252 1262 aaKnown RBP14.86□□□□□ -0.03
RTN3-209ENST00000538995 FSTL1Q12841 308 aa14.86□□□□□ -0.03
RTN3-209ENST00000538995 DDX46Q7L014 1031 aaKnown RBP14.86□□□□□ -0.03
RTN3-209ENST00000538995 TMC4Q7Z404 712 aa14.86□□□□□ -0.03
RTN3-209ENST00000538995 SYNE4Q8N205 404 aa14.86□□□□□ -0.03
RTN3-209ENST00000538995 CCDC191Q8NCU4 936 aa14.86□□□□□ -0.03
RTN3-209ENST00000538995 METTL22Q9BUU2 404 aaPredicted RBP14.86□□□□□ -0.03
RTN3-209ENST00000538995 MYH16Q9H6N6 1097 aa14.86□□□□□ -0.03
RTN3-209ENST00000538995 ATP6V0A2Q9Y487 856 aa14.86□□□□□ -0.03
RTN3-209ENST00000538995 CEP350Q5VT06 3117 aa14.86□□□□□ -0.03
RTN3-209ENST00000538995 GRAPQ13588 217 aa14.85□□□□□ -0.03
RTN3-209ENST00000538995 SF3B3Q15393 1217 aaKnown RBP14.85□□□□□ -0.03
RTN3-209ENST00000538995 ZBTB38Q8NAP3 1195 aaPredicted RBP14.85□□□□□ -0.03
RTN3-209ENST00000538995 GRAPLQ8TC17 118 aaPredicted RBP14.85□□□□□ -0.03
RTN3-209ENST00000538995 FAM89AQ96GI7 184 aa14.85□□□□□ -0.03
RTN3-209ENST00000538995 CCDC88AQ3V6T2 1871 aa14.84□□□□□ -0.03
RTN3-209ENST00000538995 IRS4O14654 1257 aaPredicted RBP14.84□□□□□ -0.03
RTN3-209ENST00000538995 KSR2Q6VAB6 950 aa14.84□□□□□ -0.03
RTN3-209ENST00000538995 L3MBTL3Q96JM7 780 aaPredicted RBP14.84□□□□□ -0.03
RTN3-209ENST00000538995 MYD88Q99836 296 aa14.84□□□□□ -0.03
RTN3-209ENST00000538995 VPS33BQ9H267 617 aa14.84□□□□□ -0.03
RTN3-209ENST00000538995 CWC25Q9NXE8 425 aaPredicted RBP14.84□□□□□ -0.03
RTN3-209ENST00000538995 SALL2Q9Y467 1007 aaPredicted RBP14.84□□□□□ -0.03
RTN3-209ENST00000538995 LAMB2P55268 1798 aa14.83□□□□□ -0.03
RTN3-209ENST00000538995 FZD9O00144 591 aa14.83□□□□□ -0.04
RTN3-209ENST00000538995 PCCAP05165 728 aaPredicted RBP14.83□□□□□ -0.04
RTN3-209ENST00000538995 SP8Q8IXZ3 490 aa14.83□□□□□ -0.04
RTN3-209ENST00000538995 SMC1BQ8NDV3 1235 aa14.83□□□□□ -0.04
RTN3-209ENST00000538995 JDP2Q8WYK2 163 aa14.83□□□□□ -0.04
RTN3-209ENST00000538995 RTFDC1Q9BY42 306 aaPredicted RBP14.83□□□□□ -0.04
RTN3-209ENST00000538995 MAP3K2Q9Y2U5 619 aa14.83□□□□□ -0.04
RTN3-209ENST00000538995 ZNF521Q96K83 1311 aa14.83□□□□□ -0.04
RTN3-209ENST00000538995 DDX60Q8IY21 1712 aaKnown RBP14.83□□□□□ -0.04
RTN3-209ENST00000538995 PI4KAP2A4QPH2 592 aa14.82□□□□□ -0.04
RTN3-209ENST00000538995 IQCA1LA6NCM1 817 aa14.82□□□□□ -0.04
RTN3-209ENST00000538995 POTECB2RU33 542 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms