RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 PI4KAP1Q8N8J0 262 aa29.11■■■□□ 2.25
SFSWAP-204ENST00000535399 MAP3K2Q9Y2U5 619 aa29.11■■■□□ 2.25
SFSWAP-204ENST00000535399 SRGNP10124 158 aa29.1■■■□□ 2.25
SFSWAP-204ENST00000535399 DALRD3Q5D0E6 543 aaKnown RBP29.1■■■□□ 2.25
SFSWAP-204ENST00000535399 METTL22Q9BUU2 404 aaPredicted RBP29.1■■■□□ 2.25
SFSWAP-204ENST00000535399 MYD88Q99836 296 aa29.09■■■□□ 2.25
SFSWAP-204ENST00000535399 RNF123Q5XPI4 1314 aa29.09■■■□□ 2.25
SFSWAP-204ENST00000535399 RIC1Q4ADV7 1423 aa29.08■■■□□ 2.25
SFSWAP-204ENST00000535399 ANKRD36CQ5JPF3 1778 aa29.08■■■□□ 2.25
SFSWAP-204ENST00000535399 FKBP5Q13451 457 aaPredicted RBP29.07■■■□□ 2.24
SFSWAP-204ENST00000535399 SLC10A5Q5PT55 438 aa29.07■■■□□ 2.24
SFSWAP-204ENST00000535399 STYK1Q6J9G0 422 aa29.07■■■□□ 2.24
SFSWAP-204ENST00000535399 SYNE4Q8N205 404 aa29.07■■■□□ 2.24
SFSWAP-204ENST00000535399 TTLL6Q8N841 843 aa29.07■■■□□ 2.24
SFSWAP-204ENST00000535399 ZNF622Q969S3 477 aaKnown RBP eCLIP29.07■■■□□ 2.241e-16■□□□□ 9
SFSWAP-204ENST00000535399 ZNF428Q96B54 188 aa29.07■■■□□ 2.24
SFSWAP-204ENST00000535399 TRMT112Q9UI30 125 aaKnown RBP29.07■■■□□ 2.24
SFSWAP-204ENST00000535399 ARFGEF2Q9Y6D5 1785 aa29.07■■■□□ 2.24
SFSWAP-204ENST00000535399 BRCA1P38398 1863 aaKnown RBP29.06■■■□□ 2.24
SFSWAP-204ENST00000535399 MASTLQ96GX5 879 aa29.06■■■□□ 2.24
SFSWAP-204ENST00000535399 ZBED9Q6R2W3 1325 aa29.05■■■□□ 2.24
SFSWAP-204ENST00000535399 SH3TC1Q8TE82 1336 aa29.05■■■□□ 2.24
SFSWAP-204ENST00000535399 CRY2Q49AN0 593 aa29.05■■■□□ 2.24
SFSWAP-204ENST00000535399 COL11A2P13942 1736 aaPredicted RBP29.05■■■□□ 2.24
SFSWAP-204ENST00000535399 CT47B1P0C2W7 299 aaPredicted RBP29.04■■■□□ 2.24
SFSWAP-204ENST00000535399 C3orf67Q6ZVT6 689 aa29.04■■■□□ 2.24
SFSWAP-204ENST00000535399 MRPL50Q8N5N7 158 aaKnown RBP29.04■■■□□ 2.24
SFSWAP-204ENST00000535399 CCDC191Q8NCU4 936 aa29.04■■■□□ 2.24
SFSWAP-204ENST00000535399 SSH1Q8WYL5 1049 aa29.04■■■□□ 2.24
SFSWAP-204ENST00000535399 IGKV5-2P06315 115 aa29.03■■■□□ 2.24
SFSWAP-204ENST00000535399 NPR1P16066 1061 aa29.03■■■□□ 2.24
SFSWAP-204ENST00000535399 DLEC1Q9Y238 1755 aa29.03■■■□□ 2.24
SFSWAP-204ENST00000535399 TNRC6CQ9HCJ0 1690 aaKnown RBP29.02■■■□□ 2.24
SFSWAP-204ENST00000535399 DNAAF4Q8WXU2 420 aa29.02■■■□□ 2.24
SFSWAP-204ENST00000535399 CNKSR1Q969H4 720 aa29.02■■■□□ 2.24
SFSWAP-204ENST00000535399 HCLS1P14317 486 aaPredicted RBP29.01■■■□□ 2.23
SFSWAP-204ENST00000535399 FAM89AQ96GI7 184 aa29.01■■■□□ 2.23
SFSWAP-204ENST00000535399 CWC25Q9NXE8 425 aaPredicted RBP29.01■■■□□ 2.23
SFSWAP-204ENST00000535399 NEXNQ0ZGT2 675 aa29■■■□□ 2.23
SFSWAP-204ENST00000535399 ALDH1L2Q3SY69 923 aa29■■■□□ 2.23
SFSWAP-204ENST00000535399 ZBTB38Q8NAP3 1195 aaPredicted RBP29■■■□□ 2.23
SFSWAP-204ENST00000535399 NLRP3Q96P20 1036 aa29■■■□□ 2.23
SFSWAP-204ENST00000535399 CACNA1FO60840 1977 aa29■■■□□ 2.23
SFSWAP-204ENST00000535399 F6X3S4 739 aa28.99■■■□□ 2.23
SFSWAP-204ENST00000535399 NEURL1BA8MQ27 555 aa28.98■■■□□ 2.23
SFSWAP-204ENST00000535399 PRPF40BQ6NWY9 871 aaKnown RBP28.98■■■□□ 2.23
SFSWAP-204ENST00000535399 BCL2L13Q9BXK5 485 aa28.98■■■□□ 2.23
SFSWAP-204ENST00000535399 PCCAP05165 728 aaPredicted RBP28.97■■■□□ 2.23
SFSWAP-204ENST00000535399 HOXA10P31260 410 aaPredicted RBP28.97■■■□□ 2.23
SFSWAP-204ENST00000535399 CWF19L2Q2TBE0 894 aaKnown RBP28.97■■■□□ 2.23
SFSWAP-204ENST00000535399 RTL5Q5HYW3 569 aaPredicted RBP28.97■■■□□ 2.23
SFSWAP-204ENST00000535399 ARHGAP27Q6ZUM4 889 aa28.97■■■□□ 2.23
SFSWAP-204ENST00000535399 IRS4O14654 1257 aaPredicted RBP28.95■■■□□ 2.22
SFSWAP-204ENST00000535399 LINS1Q8NG48 757 aa28.95■■■□□ 2.22
SFSWAP-204ENST00000535399 RPGRQ92834 1020 aaKnown RBP28.95■■■□□ 2.22
SFSWAP-204ENST00000535399 SMC4Q9NTJ3 1288 aa28.95■■■□□ 2.22
SFSWAP-204ENST00000535399 C7orf43Q8WVR3 580 aa28.94■■■□□ 2.22
SFSWAP-204ENST00000535399 JARID2Q92833 1246 aaPredicted RBP28.94■■■□□ 2.22
SFSWAP-204ENST00000535399 ARFGEF1Q9Y6D6 1849 aa28.94■■■□□ 2.22
SFSWAP-204ENST00000535399 C21orf2O43822 256 aa28.93■■■□□ 2.22
SFSWAP-204ENST00000535399 ALDH1B1P30837 517 aa28.93■■■□□ 2.22
SFSWAP-204ENST00000535399 RARSP54136 660 aaKnown RBP28.93■■■□□ 2.22
SFSWAP-204ENST00000535399 BEND3Q5T5X7 828 aa28.93■■■□□ 2.22
SFSWAP-204ENST00000535399 CRAMP1Q96RY5 1269 aa28.93■■■□□ 2.22
SFSWAP-204ENST00000535399 GCKRQ14397 625 aa28.92■■■□□ 2.22
SFSWAP-204ENST00000535399 RBM17Q96I25 401 aaKnown RBP28.92■■■□□ 2.22
SFSWAP-204ENST00000535399 ZNF219Q9P2Y4 722 aaPredicted RBP28.92■■■□□ 2.22
SFSWAP-204ENST00000535399 PTPRCP08575 1304 aa28.92■■■□□ 2.22
SFSWAP-204ENST00000535399 YY1P25490 414 aa28.91■■■□□ 2.22
SFSWAP-204ENST00000535399 BRPF1P55201 1214 aaPredicted RBP28.91■■■□□ 2.22
SFSWAP-204ENST00000535399 H7C1W4 665 aa28.9■■■□□ 2.22
SFSWAP-204ENST00000535399 SF3B3Q15393 1217 aaKnown RBP28.9■■■□□ 2.22
SFSWAP-204ENST00000535399 CDHR2Q9BYE9 1310 aa28.9■■■□□ 2.22
SFSWAP-204ENST00000535399 SLX4Q8IY92 1834 aa28.9■■■□□ 2.22
SFSWAP-204ENST00000535399 DDX60Q8IY21 1712 aaKnown RBP28.87■■■□□ 2.21
SFSWAP-204ENST00000535399 HSP90B1P14625 803 aaKnown RBP28.87■■■□□ 2.21
SFSWAP-204ENST00000535399 SLC4A10Q6U841 1118 aa28.87■■■□□ 2.21
SFSWAP-204ENST00000535399 ABCC4O15439 1325 aa28.87■■■□□ 2.21
SFSWAP-204ENST00000535399 NFKBIEO00221 500 aa28.86■■■□□ 2.21
SFSWAP-204ENST00000535399 PDE8AO60658 829 aa28.86■■■□□ 2.21
SFSWAP-204ENST00000535399 CASP7P55210 303 aa28.86■■■□□ 2.21
SFSWAP-204ENST00000535399 RASSF7Q02833 373 aa28.86■■■□□ 2.21
SFSWAP-204ENST00000535399 SOGA3Q5TF21 947 aa28.86■■■□□ 2.21
SFSWAP-204ENST00000535399 OLFM4Q6UX06 510 aa28.85■■■□□ 2.21
SFSWAP-204ENST00000535399 DDX46Q7L014 1031 aaKnown RBP28.85■■■□□ 2.21
SFSWAP-204ENST00000535399 UBE3BQ7Z3V4 1068 aa28.85■■■□□ 2.21
SFSWAP-204ENST00000535399 NOB1Q9ULX3 412 aaKnown RBP28.85■■■□□ 2.21
SFSWAP-204ENST00000535399 ALDH1L1O75891 902 aa28.84■■■□□ 2.21
SFSWAP-204ENST00000535399 CHD4Q14839 1912 aa28.84■■■□□ 2.21
SFSWAP-204ENST00000535399 PRELPP51888 382 aa28.83■■■□□ 2.21
SFSWAP-204ENST00000535399 GRAPQ13588 217 aa28.83■■■□□ 2.21
SFSWAP-204ENST00000535399 CCDC93Q567U6 631 aa28.83■■■□□ 2.21
SFSWAP-204ENST00000535399 GRAPLQ8TC17 118 aaPredicted RBP28.83■■■□□ 2.21
SFSWAP-204ENST00000535399 SRCIN1Q9C0H9 1055 aa28.83■■■□□ 2.21
SFSWAP-204ENST00000535399 LAMB2P55268 1798 aa28.83■■■□□ 2.21
SFSWAP-204ENST00000535399 PPEF1O14829 653 aaPredicted RBP28.82■■■□□ 2.2
SFSWAP-204ENST00000535399 SLC51AQ86UW1 340 aa28.82■■■□□ 2.2
SFSWAP-204ENST00000535399 CTSWP56202 376 aa28.81■■■□□ 2.2
SFSWAP-204ENST00000535399 PLA2G12BQ9BX93 195 aa28.81■■■□□ 2.2
SFSWAP-204ENST00000535399 SNED1Q8TER0 1413 aa28.8■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms