RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 NDUFB5O43674 189 aa4.91□□□□□ -1.62
CD44-234ENST00000531873 PTGIRP43119 386 aa4.91□□□□□ -1.62
CD44-234ENST00000531873 DSC3Q14574 896 aa4.91□□□□□ -1.62
CD44-234ENST00000531873 TEAD4Q15561 434 aa4.91□□□□□ -1.62
CD44-234ENST00000531873 EAPPQ56P03 285 aaPredicted RBP4.91□□□□□ -1.62
CD44-234ENST00000531873 ZNF326Q5BKZ1 582 aaKnown RBP4.91□□□□□ -1.62
CD44-234ENST00000531873 LYSMD3Q7Z3D4 306 aa4.91□□□□□ -1.62
CD44-234ENST00000531873 ATCAYQ86WG3 371 aa4.91□□□□□ -1.62
CD44-234ENST00000531873 NBPF15Q8N660 670 aa4.91□□□□□ -1.62
CD44-234ENST00000531873 ZNF395Q9H8N7 513 aaPredicted RBP4.91□□□□□ -1.62
CD44-234ENST00000531873 SERTM1A2A2V5 107 aa4.9□□□□□ -1.63
CD44-234ENST00000531873 TCF3P15923 654 aa4.9□□□□□ -1.63
CD44-234ENST00000531873 COL8A1P27658 744 aa4.9□□□□□ -1.63
CD44-234ENST00000531873 NOS2P35228 1153 aa4.9□□□□□ -1.63
CD44-234ENST00000531873 SNRPNP63162 240 aaKnown RBP4.9□□□□□ -1.63
CD44-234ENST00000531873 CENPCQ03188 943 aa4.9□□□□□ -1.63
CD44-234ENST00000531873 DBN1Q16643 649 aa4.9□□□□□ -1.63
CD44-234ENST00000531873 ETFBKMTQ8IXQ9 262 aa4.9□□□□□ -1.63
CD44-234ENST00000531873 ALDH16A1Q8IZ83 802 aa4.9□□□□□ -1.63
CD44-234ENST00000531873 NGLY1Q96IV0 654 aa4.9□□□□□ -1.63
CD44-234ENST00000531873 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.9□□□□□ -1.635e-38■■■■■ 698.7
CD44-234ENST00000531873 BRPF3Q9ULD4 1205 aa4.9□□□□□ -1.63
CD44-234ENST00000531873 MKL2Q9ULH7 1088 aa4.9□□□□□ -1.63
CD44-234ENST00000531873 GPR25O00155 361 aa4.89□□□□□ -1.63
CD44-234ENST00000531873 MEN1O00255 615 aa4.89□□□□□ -1.63
CD44-234ENST00000531873 ITGB7P26010 798 aa4.89□□□□□ -1.63
CD44-234ENST00000531873 RNF144AP50876 292 aaPredicted RBP4.89□□□□□ -1.63
CD44-234ENST00000531873 MRPL58Q14197 206 aaKnown RBP4.89□□□□□ -1.63
CD44-234ENST00000531873 RTN1Q16799 776 aa4.89□□□□□ -1.63
CD44-234ENST00000531873 ALKBH2Q6NS38 261 aa4.89□□□□□ -1.63
CD44-234ENST00000531873 PPARGC1BQ86YN6 1023 aaKnown RBP4.89□□□□□ -1.63
CD44-234ENST00000531873 GJD3Q8N144 294 aa4.89□□□□□ -1.63
CD44-234ENST00000531873 ABTB2Q8N961 1025 aa4.89□□□□□ -1.63
CD44-234ENST00000531873 L3MBTL2Q969R5 705 aa4.89□□□□□ -1.63
CD44-234ENST00000531873 ALKBH8Q96BT7 664 aaKnown RBP4.89□□□□□ -1.63
CD44-234ENST00000531873 CITED4Q96RK1 184 aa4.89□□□□□ -1.63
CD44-234ENST00000531873 PHACTR1Q9C0D0 580 aa4.89□□□□□ -1.63
CD44-234ENST00000531873 NSFL1CQ9UNZ2 370 aaKnown RBP4.89□□□□□ -1.63
CD44-234ENST00000531873 PARP3Q9Y6F1 533 aa4.89□□□□□ -1.63
CD44-234ENST00000531873 H7C1W4 665 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 TXLNAP40222 546 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 EHHADHQ08426 723 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 DGKZQ13574 1117 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 LDLRAD1Q5T700 205 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 KLRG1Q96E93 195 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 DMRTB1Q96MA1 342 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 KRTAP9-9Q9BYP9 154 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 KRTAP9-4Q9BYQ2 154 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 RNF19AQ9NV58 838 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 CABP1Q9NZU7 370 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 KLK14Q9P0G3 267 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 POLIQ9UNA4 740 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 ZNF232Q9UNY5 417 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 CHMP3Q9Y3E7 222 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 HCN4Q9Y3Q4 1203 aa4.88□□□□□ -1.63
CD44-234ENST00000531873 MX2P20592 715 aa4.87□□□□□ -1.63
CD44-234ENST00000531873 BRD2P25440 801 aaKnown RBP4.87□□□□□ -1.63
CD44-234ENST00000531873 C11orf91Q3C1V1 193 aa4.87□□□□□ -1.63
CD44-234ENST00000531873 RHBDD1Q8TEB9 315 aa4.87□□□□□ -1.63
CD44-234ENST00000531873 C7orf43Q8WVR3 580 aa4.87□□□□□ -1.63
CD44-234ENST00000531873 NLRP3Q96P20 1036 aa4.87□□□□□ -1.63
CD44-234ENST00000531873 TRERF1Q96PN7 1200 aa4.87□□□□□ -1.63
CD44-234ENST00000531873 ZSCAN10Q96SZ4 725 aaPredicted RBP4.87□□□□□ -1.63
CD44-234ENST00000531873 SETDB2Q96T68 719 aa4.87□□□□□ -1.63
CD44-234ENST00000531873 BCS1LQ9Y276 419 aa4.87□□□□□ -1.63
CD44-234ENST00000531873 DYRK1BQ9Y463 629 aa4.87□□□□□ -1.63
CD44-234ENST00000531873 PDGFAP04085 211 aa4.86□□□□□ -1.63
CD44-234ENST00000531873 MZF1P28698 734 aaPredicted RBP4.86□□□□□ -1.63
CD44-234ENST00000531873 ZAP70P43403 619 aa4.86□□□□□ -1.63
CD44-234ENST00000531873 MAPK8P45983 427 aa4.86□□□□□ -1.63
CD44-234ENST00000531873 MAP2K3P46734 347 aa4.86□□□□□ -1.63
CD44-234ENST00000531873 PLA2G4AP47712 749 aa4.86□□□□□ -1.63
CD44-234ENST00000531873 C4orf17Q53FE4 359 aa4.86□□□□□ -1.63
CD44-234ENST00000531873 EDEM1Q92611 657 aa4.86□□□□□ -1.63
CD44-234ENST00000531873 GTPBP3Q969Y2 492 aaKnown RBP4.86□□□□□ -1.63
CD44-234ENST00000531873 OXCT2Q9BYC2 517 aaPredicted RBP4.86□□□□□ -1.63
CD44-234ENST00000531873 NIFKQ9BYG3 293 aaKnown RBP4.86□□□□□ -1.63
CD44-234ENST00000531873 GRIP2Q9C0E4 1043 aa4.86□□□□□ -1.63
CD44-234ENST00000531873 WWC3Q9ULE0 1092 aa4.86□□□□□ -1.63
CD44-234ENST00000531873 LOC105371045A0A1W2PR82 267 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 BTBD11A6QL63 1104 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 C1QTNF9BB2RNN3 333 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 SHISA8B8ZZ34 492 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 PRPF40AO75400 957 aaKnown RBP4.85□□□□□ -1.63
CD44-234ENST00000531873 LDHBP07195 334 aaKnown RBP4.85□□□□□ -1.63
CD44-234ENST00000531873 GPC1P35052 558 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 DNM1Q05193 864 aaKnown RBP4.85□□□□□ -1.63
CD44-234ENST00000531873 PDE3BQ13370 1112 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 AAMPQ13685 434 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 TSNAXIP1Q2TAA8 658 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 C1orf53Q5VUE5 145 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 TMEM214Q6NUQ4 689 aaKnown RBP4.85□□□□□ -1.63
CD44-234ENST00000531873 LINC00114Q6XXX2 140 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 PRICKLE2Q7Z3G6 844 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 TREML1Q86YW5 311 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 TMC1Q8TDI8 760 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 IFT43Q96FT9 208 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 FAM161BQ96MY7 647 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 CFHR5Q9BXR6 569 aa4.85□□□□□ -1.63
CD44-234ENST00000531873 KRTAP4-8A0A0G2JLE6 195 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms