RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 RABL6Q3YEC7 729 aaPredicted RBP26.07■■□□□ 1.76
VPS28-208ENST00000527797 HSP90AB4PQ58FF6 505 aa26.07■■□□□ 1.76
VPS28-208ENST00000527797 RTL5Q5HYW3 569 aaPredicted RBP26.07■■□□□ 1.76
VPS28-208ENST00000527797 AK7Q96M32 723 aa26.07■■□□□ 1.76
VPS28-208ENST00000527797 PLSCR1O15162 318 aa26.06■■□□□ 1.76
VPS28-208ENST00000527797 RGL2O15211 777 aa26.06■■□□□ 1.76
VPS28-208ENST00000527797 APBA3O96018 575 aa26.06■■□□□ 1.76
VPS28-208ENST00000527797 CLEC4GQ6UXB4 293 aa26.06■■□□□ 1.76
VPS28-208ENST00000527797 RAB11FIP3O75154 756 aa26.06■■□□□ 1.76
VPS28-208ENST00000527797 TXNRD1Q16881 649 aa26.05■■□□□ 1.76
VPS28-208ENST00000527797 LRRCC1Q9C099 1032 aa26.05■■□□□ 1.76
VPS28-208ENST00000527797 NOP58Q9Y2X3 529 aaKnown RBP26.05■■□□□ 1.76
VPS28-208ENST00000527797 FOXO4P98177 505 aa26.04■■□□□ 1.76
VPS28-208ENST00000527797 PARP10Q53GL7 1025 aa26.04■■□□□ 1.76
VPS28-208ENST00000527797 FAM89AQ96GI7 184 aa26.04■■□□□ 1.76
VPS28-208ENST00000527797 NARFQ9UHQ1 456 aa26.04■■□□□ 1.76
VPS28-208ENST00000527797 SMARCA5O60264 1052 aaPredicted RBP26.03■■□□□ 1.76
VPS28-208ENST00000527797 TRMT112Q9UI30 125 aaKnown RBP26.03■■□□□ 1.76
VPS28-208ENST00000527797 C4BP0C0L5 1744 aa26.03■■□□□ 1.76
VPS28-208ENST00000527797 UBN2Q6ZU65 1347 aa26.03■■□□□ 1.76
VPS28-208ENST00000527797 CDHR2Q9BYE9 1310 aa26.03■■□□□ 1.76
VPS28-208ENST00000527797 LMBR1LQ6UX01 489 aa26.03■■□□□ 1.76
VPS28-208ENST00000527797 NUP98P52948 1817 aa26.02■■□□□ 1.76
VPS28-208ENST00000527797 TAF1LQ8IZX4 1826 aa26.02■■□□□ 1.76
VPS28-208ENST00000527797 ZPR1O75312 459 aa26.02■■□□□ 1.76
VPS28-208ENST00000527797 TRAPPC3LQ5T215 181 aa26.02■■□□□ 1.76
VPS28-208ENST00000527797 SMIM5Q71RC9 77 aa26.02■■□□□ 1.76
VPS28-208ENST00000527797 PLA2G12BQ9BX93 195 aa26.02■■□□□ 1.76
VPS28-208ENST00000527797 NIP7Q9Y221 180 aaKnown RBP eCLIP26.02■■□□□ 1.76
VPS28-208ENST00000527797 ANKRD36CQ5JPF3 1778 aa26.01■■□□□ 1.75
VPS28-208ENST00000527797 PROM2Q8N271 834 aa26.01■■□□□ 1.75
VPS28-208ENST00000527797 ARHGEF1Q92888 912 aaKnown RBP26.01■■□□□ 1.75
VPS28-208ENST00000527797 TSHZ2Q9NRE2 1034 aa26.01■■□□□ 1.75
VPS28-208ENST00000527797 ADRA2BP18089 450 aa26■■□□□ 1.75
VPS28-208ENST00000527797 OS9Q13438 667 aaPredicted RBP26■■□□□ 1.75
VPS28-208ENST00000527797 SUSD4Q5VX71 490 aa26■■□□□ 1.75
VPS28-208ENST00000527797 USPL1Q5W0Q7 1092 aa26■■□□□ 1.75
VPS28-208ENST00000527797 UTP14AQ9BVJ6 771 aaKnown RBP26■■□□□ 1.75
VPS28-208ENST00000527797 KIF1BPQ96EK5 621 aa25.99■■□□□ 1.75
VPS28-208ENST00000527797 BCL11AQ9H165 835 aa25.99■■□□□ 1.75
VPS28-208ENST00000527797 PA2G4Q9UQ80 394 aaKnown RBP25.99■■□□□ 1.75
VPS28-208ENST00000527797 RFC4P35249 363 aa25.99■■□□□ 1.75
VPS28-208ENST00000527797 G3BP1Q13283 466 aaKnown RBP eCLIP25.99■■□□□ 1.75
VPS28-208ENST00000527797 ERC1Q8IUD2 1116 aa25.99■■□□□ 1.75
VPS28-208ENST00000527797 RHPN1Q8TCX5 695 aa25.99■■□□□ 1.75
VPS28-208ENST00000527797 CHMP3Q9Y3E7 222 aa25.99■■□□□ 1.75
VPS28-208ENST00000527797 IRS4O14654 1257 aaPredicted RBP25.98■■□□□ 1.75
VPS28-208ENST00000527797 PHF14O94880 888 aa25.98■■□□□ 1.75
VPS28-208ENST00000527797 RFX5P48382 616 aaPredicted RBP25.98■■□□□ 1.75
VPS28-208ENST00000527797 AMIGO3Q86WK7 504 aa25.98■■□□□ 1.75
VPS28-208ENST00000527797 C16orf71Q8IYS4 520 aaPredicted RBP25.98■■□□□ 1.75
VPS28-208ENST00000527797 COPRSQ9NQ92 184 aa25.98■■□□□ 1.75
VPS28-208ENST00000527797 BCL2L12Q9HB09 334 aa25.97■■□□□ 1.75
VPS28-208ENST00000527797 SRP68Q9UHB9 627 aaKnown RBP25.97■■□□□ 1.75
VPS28-208ENST00000527797 BCORQ6W2J9 1755 aa25.96■■□□□ 1.75
VPS28-208ENST00000527797 SH3TC1Q8TE82 1336 aa25.96■■□□□ 1.75
VPS28-208ENST00000527797 FAM161AQ3B820 660 aa25.96■■□□□ 1.75
VPS28-208ENST00000527797 PLEKHM2Q8IWE5 1019 aa25.96■■□□□ 1.75
VPS28-208ENST00000527797 SYNE4Q8N205 404 aa25.96■■□□□ 1.75
VPS28-208ENST00000527797 FAM177BA6PVY3 158 aa25.95■■□□□ 1.74
VPS28-208ENST00000527797 PTPN12Q05209 780 aaKnown RBP25.95■■□□□ 1.74
VPS28-208ENST00000527797 USP42Q9H9J4 1324 aaKnown RBP25.94■■□□□ 1.74
VPS28-208ENST00000527797 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.94■■□□□ 1.74
VPS28-208ENST00000527797 PDE8AO60658 829 aa25.94■■□□□ 1.74
VPS28-208ENST00000527797 CSF1RP07333 972 aa25.94■■□□□ 1.74
VPS28-208ENST00000527797 SSFA2P28290 1259 aa25.94■■□□□ 1.74
VPS28-208ENST00000527797 KLHDC4Q8TBB5 520 aa25.94■■□□□ 1.74
VPS28-208ENST00000527797 IL1RAPL2Q9NP60 686 aa25.94■■□□□ 1.74
VPS28-208ENST00000527797 NTSR2O95665 410 aa25.93■■□□□ 1.74
VPS28-208ENST00000527797 HSP90B1P14625 803 aaKnown RBP25.93■■□□□ 1.74
VPS28-208ENST00000527797 TBC1D9BQ66K14 1250 aa25.93■■□□□ 1.74
VPS28-208ENST00000527797 BACH2Q9BYV9 841 aa25.93■■□□□ 1.74
VPS28-208ENST00000527797 SIL1Q9H173 461 aa25.93■■□□□ 1.74
VPS28-208ENST00000527797 SCN7AQ01118 1682 aa25.93■■□□□ 1.74
VPS28-208ENST00000527797 BICDL1Q6ZP65 573 aa25.92■■□□□ 1.74
VPS28-208ENST00000527797 OTUD7AQ8TE49 926 aaPredicted RBP25.92■■□□□ 1.74
VPS28-208ENST00000527797 CTSWP56202 376 aa25.92■■□□□ 1.74
VPS28-208ENST00000527797 CCDC57Q2TAC2 916 aa25.92■■□□□ 1.74
VPS28-208ENST00000527797 SETDB2Q96T68 719 aa25.92■■□□□ 1.74
VPS28-208ENST00000527797 CLASRPQ8N2M8 674 aaKnown RBP25.9■■□□□ 1.74
VPS28-208ENST00000527797 TTLL11Q8NHH1 800 aa25.9■■□□□ 1.74
VPS28-208ENST00000527797 SASH1O94885 1247 aa25.89■■□□□ 1.74
VPS28-208ENST00000527797 C8orf34Q49A92 452 aa25.89■■□□□ 1.74
VPS28-208ENST00000527797 BMP2KLQ5H9B9 411 aa25.89■■□□□ 1.74
VPS28-208ENST00000527797 TNS1Q9HBL0 1735 aaKnown RBP25.89■■□□□ 1.73
VPS28-208ENST00000527797 IFIT5Q13325 482 aaKnown RBP25.88■■□□□ 1.73
VPS28-208ENST00000527797 OSBPL3Q9H4L5 887 aa25.88■■□□□ 1.73
VPS28-208ENST00000527797 HCLS1P14317 486 aaPredicted RBP25.88■■□□□ 1.73
VPS28-208ENST00000527797 MX1P20591 662 aa25.88■■□□□ 1.73
VPS28-208ENST00000527797 PDE1AP54750 535 aa25.88■■□□□ 1.73
VPS28-208ENST00000527797 AKT1S1Q96B36 256 aa25.88■■□□□ 1.73
VPS28-208ENST00000527797 CCDC85AQ96PX6 553 aaPredicted RBP25.88■■□□□ 1.73
VPS28-208ENST00000527797 NYXQ9GZU5 481 aa25.88■■□□□ 1.73
VPS28-208ENST00000527797 TFCP2L1Q9NZI6 479 aa25.88■■□□□ 1.73
VPS28-208ENST00000527797 SALL3Q9BXA9 1300 aa25.87■■□□□ 1.73
VPS28-208ENST00000527797 TTC22Q5TAA0 569 aa25.87■■□□□ 1.73
VPS28-208ENST00000527797 NUTM1Q86Y26 1132 aa25.87■■□□□ 1.73
VPS28-208ENST00000527797 UBR3Q6ZT12 1888 aa25.86■■□□□ 1.73
VPS28-208ENST00000527797 ANKRD18BA2A2Z9 1011 aa25.85■■□□□ 1.73
VPS28-208ENST00000527797 GTF2E1P29083 439 aaPredicted RBP25.85■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms