RNA–Protein interactions for RNA: ENST00000522911.5

SDC2-207, Transcript of syndecan 2, humanhuman

TSL 3 BASIC

Gene SDC2, Length 677 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-207ENST00000522911 ZNF541Q9H0D2 1346 aa12.4□□□□□ -0.42
SDC2-207ENST00000522911 NUP98P52948 1817 aa12.4□□□□□ -0.42
SDC2-207ENST00000522911 NTSR2O95665 410 aa12.4□□□□□ -0.42
SDC2-207ENST00000522911 SLC10A5Q5PT55 438 aa12.4□□□□□ -0.42
SDC2-207ENST00000522911 TTLL7Q6ZT98 887 aa12.4□□□□□ -0.42
SDC2-207ENST00000522911 TMEM88BA6NKF7 163 aa12.39□□□□□ -0.43
SDC2-207ENST00000522911 EPHX2P34913 555 aa12.39□□□□□ -0.43
SDC2-207ENST00000522911 PDIA6Q15084 440 aa12.39□□□□□ -0.43
SDC2-207ENST00000522911 OLFM4Q6UX06 510 aa12.39□□□□□ -0.43
SDC2-207ENST00000522911 PPP1R42Q7Z4L9 355 aa12.39□□□□□ -0.43
SDC2-207ENST00000522911 TNS4Q8IZW8 715 aa12.39□□□□□ -0.43
SDC2-207ENST00000522911 JDP2Q8WYK2 163 aa12.39□□□□□ -0.43
SDC2-207ENST00000522911 MAPK8IP3Q9UPT6 1336 aa12.38□□□□□ -0.43
SDC2-207ENST00000522911 RASSF10A6NK89 507 aa12.38□□□□□ -0.43
SDC2-207ENST00000522911 RALBP1Q15311 655 aa12.38□□□□□ -0.43
SDC2-207ENST00000522911 SUSD4Q5VX71 490 aa12.38□□□□□ -0.43
SDC2-207ENST00000522911 NUTM1Q86Y26 1132 aa12.38□□□□□ -0.43
SDC2-207ENST00000522911 RPGRQ92834 1020 aaKnown RBP12.38□□□□□ -0.43
SDC2-207ENST00000522911 RBM17Q96I25 401 aaKnown RBP12.38□□□□□ -0.43
SDC2-207ENST00000522911 PRDM10Q9NQV6 1147 aa12.38□□□□□ -0.43
SDC2-207ENST00000522911 RRP7AQ9Y3A4 280 aaKnown RBP12.38□□□□□ -0.43
SDC2-207ENST00000522911 LMOD3Q0VAK6 560 aa12.37□□□□□ -0.43
SDC2-207ENST00000522911 RTFDC1Q9BY42 306 aaPredicted RBP12.37□□□□□ -0.43
SDC2-207ENST00000522911 COL4A5P29400 1685 aa12.36□□□□□ -0.43
SDC2-207ENST00000522911 FAM177BA6PVY3 158 aa12.36□□□□□ -0.43
SDC2-207ENST00000522911 MYL6BP14649 208 aa12.36□□□□□ -0.43
SDC2-207ENST00000522911 EIF6P56537 245 aaKnown RBP12.36□□□□□ -0.43
SDC2-207ENST00000522911 HSP90AB3PQ58FF7 597 aa12.36□□□□□ -0.43
SDC2-207ENST00000522911 CNTROBQ8N137 903 aa12.36□□□□□ -0.43
SDC2-207ENST00000522911 NLRP3Q96P20 1036 aa12.36□□□□□ -0.43
SDC2-207ENST00000522911 THUMPD2Q9BTF0 503 aaKnown RBP12.36□□□□□ -0.43
SDC2-207ENST00000522911 ZBTB3Q9H5J0 574 aa12.36□□□□□ -0.43
SDC2-207ENST00000522911 MKRN1Q9UHC7 482 aaKnown RBP12.36□□□□□ -0.43
SDC2-207ENST00000522911 TSPYL4Q9UJ04 414 aa12.36□□□□□ -0.43
SDC2-207ENST00000522911 ATP6V0A2Q9Y487 856 aa12.36□□□□□ -0.43
SDC2-207ENST00000522911 PPEF1O14829 653 aaPredicted RBP12.35□□□□□ -0.43
SDC2-207ENST00000522911 BBOX1O75936 387 aa12.35□□□□□ -0.43
SDC2-207ENST00000522911 GPTP24298 496 aa12.35□□□□□ -0.43
SDC2-207ENST00000522911 TMPOP42166 694 aaKnown RBP12.35□□□□□ -0.43
SDC2-207ENST00000522911 SCNN1DP51172 638 aa12.35□□□□□ -0.43
SDC2-207ENST00000522911 USP50Q70EL3 339 aaPredicted RBP12.35□□□□□ -0.43
SDC2-207ENST00000522911 NGEFQ8N5V2 710 aa12.35□□□□□ -0.43
SDC2-207ENST00000522911 WBP1LQ9NX94 342 aa12.35□□□□□ -0.43
SDC2-207ENST00000522911 CDHR2Q9BYE9 1310 aa12.35□□□□□ -0.43
SDC2-207ENST00000522911 HOXB7P09629 217 aa12.34□□□□□ -0.43
SDC2-207ENST00000522911 VEGFBP49765 207 aa12.34□□□□□ -0.43
SDC2-207ENST00000522911 RIPK4P57078 832 aa12.34□□□□□ -0.43
SDC2-207ENST00000522911 EAPPQ56P03 285 aaPredicted RBP12.34□□□□□ -0.43
SDC2-207ENST00000522911 TMC4Q7Z404 712 aa12.34□□□□□ -0.43
SDC2-207ENST00000522911 SUPT20HQ8NEM7 779 aa12.34□□□□□ -0.43
SDC2-207ENST00000522911 UTP14AQ9BVJ6 771 aaKnown RBP12.34□□□□□ -0.43
SDC2-207ENST00000522911 CHL1O00533 1208 aa12.33□□□□□ -0.44
SDC2-207ENST00000522911 LMOD1P29536 600 aaPredicted RBP12.33□□□□□ -0.44
SDC2-207ENST00000522911 CTCFP49711 727 aaPredicted RBP12.33□□□□□ -0.44
SDC2-207ENST00000522911 C3orf67Q6ZVT6 689 aa12.33□□□□□ -0.44
SDC2-207ENST00000522911 SP8Q8IXZ3 490 aa12.33□□□□□ -0.44
SDC2-207ENST00000522911 LARGE2Q8N3Y3 721 aa12.33□□□□□ -0.44
SDC2-207ENST00000522911 DDX21Q9NR30 783 aaKnown RBP eCLIP12.33□□□□□ -0.44
SDC2-207ENST00000522911 LTBP1Q14766 1721 aa12.32□□□□□ -0.44
SDC2-207ENST00000522911 FOXN1O15353 648 aa12.32□□□□□ -0.44
SDC2-207ENST00000522911 TCIRG1Q13488 830 aa12.32□□□□□ -0.44
SDC2-207ENST00000522911 DEFB115Q30KQ5 88 aa12.32□□□□□ -0.44
SDC2-207ENST00000522911 NLRP10Q86W26 655 aa12.32□□□□□ -0.44
SDC2-207ENST00000522911 NIM1KQ8IY84 436 aa12.32□□□□□ -0.44
SDC2-207ENST00000522911 TMX4Q9H1E5 349 aaPredicted RBP12.32□□□□□ -0.44
SDC2-207ENST00000522911 PGAP2Q9UHJ9 254 aa12.32□□□□□ -0.44
SDC2-207ENST00000522911 CLEC11AQ9Y240 323 aa12.32□□□□□ -0.44
SDC2-207ENST00000522911 THSD7BQ9C0I4 1608 aa12.32□□□□□ -0.44
SDC2-207ENST00000522911 ABCC4O15439 1325 aa12.32□□□□□ -0.44
SDC2-207ENST00000522911 ANKRD36CQ5JPF3 1778 aa12.31□□□□□ -0.44
SDC2-207ENST00000522911 MAP2K1Q02750 393 aaPredicted RBP12.31□□□□□ -0.44
SDC2-207ENST00000522911 KIAA2012Q0VF49 1180 aa12.31□□□□□ -0.44
SDC2-207ENST00000522911 PROSER3Q2NL68 480 aa12.31□□□□□ -0.44
SDC2-207ENST00000522911 MAP1SQ66K74 1059 aaPredicted RBP12.31□□□□□ -0.44
SDC2-207ENST00000522911 ADARB2Q9NS39 739 aaKnown RBP12.31□□□□□ -0.44
SDC2-207ENST00000522911 GPRC5DQ9NZD1 345 aa12.31□□□□□ -0.44
SDC2-207ENST00000522911 ZNRF3Q9ULT6 936 aa12.31□□□□□ -0.44
SDC2-207ENST00000522911 MYBBP1AQ9BQG0 1328 aaKnown RBP12.31□□□□□ -0.44
SDC2-207ENST00000522911 PPIP5K2O43314 1243 aa12.3□□□□□ -0.44
SDC2-207ENST00000522911 EIF2S2P20042 333 aaKnown RBP12.3□□□□□ -0.44
SDC2-207ENST00000522911 EPS15P42566 896 aa12.3□□□□□ -0.44
SDC2-207ENST00000522911 TRIM28Q13263 835 aaKnown RBP12.3□□□□□ -0.44
SDC2-207ENST00000522911 PPP4R3CPQ6ZMV5 832 aa12.3□□□□□ -0.44
SDC2-207ENST00000522911 COPS6Q7L5N1 327 aa12.3□□□□□ -0.44
SDC2-207ENST00000522911 ZC3H15Q8WU90 426 aaKnown RBP12.3□□□□□ -0.44
SDC2-207ENST00000522911 AIDAQ96BJ3 306 aa12.3□□□□□ -0.44
SDC2-207ENST00000522911 HHIPL1Q96JK4 782 aa12.3□□□□□ -0.44
SDC2-207ENST00000522911 SH3TC1Q8TE82 1336 aa12.3□□□□□ -0.44
SDC2-207ENST00000522911 CXCL9Q07325 125 aa12.29□□□□□ -0.44
SDC2-207ENST00000522911 GRAPQ13588 217 aa12.29□□□□□ -0.44
SDC2-207ENST00000522911 GRAPLQ8TC17 118 aaPredicted RBP12.29□□□□□ -0.44
SDC2-207ENST00000522911 XAGE3Q8WTP9 111 aa12.29□□□□□ -0.44
SDC2-207ENST00000522911 TRIM35Q9UPQ4 493 aa12.29□□□□□ -0.44
SDC2-207ENST00000522911 GJA3Q9Y6H8 435 aa12.29□□□□□ -0.44
SDC2-207ENST00000522911 WDR33Q9C0J8 1336 aaKnown RBP12.29□□□□□ -0.44
SDC2-207ENST00000522911 ECE1P42892 770 aa12.28□□□□□ -0.44
SDC2-207ENST00000522911 SF3B3Q15393 1217 aaKnown RBP12.28□□□□□ -0.44
SDC2-207ENST00000522911 AOC3Q16853 763 aa12.28□□□□□ -0.44
SDC2-207ENST00000522911 DPP8Q6V1X1 898 aaPredicted RBP12.28□□□□□ -0.44
SDC2-207ENST00000522911 DDX46Q7L014 1031 aaKnown RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms