RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 CCDC24Q8N4L8 307 aa18.17■□□□□ 0.5
NUP54-216ENST00000514901 SMC4Q9NTJ3 1288 aa18.17■□□□□ 0.5
NUP54-216ENST00000514901 PIM2Q9P1W9 311 aa18.17■□□□□ 0.5
NUP54-216ENST00000514901 PXDNLA1KZ92 1463 aa18.17■□□□□ 0.5
NUP54-216ENST00000514901 PTPRCP08575 1304 aa18.17■□□□□ 0.5
NUP54-216ENST00000514901 HSP90B1P14625 803 aaKnown RBP18.16■□□□□ 0.5
NUP54-216ENST00000514901 KCNA3P22001 575 aa18.16■□□□□ 0.5
NUP54-216ENST00000514901 RARSP54136 660 aaKnown RBP18.16■□□□□ 0.5
NUP54-216ENST00000514901 GPR162Q16538 588 aa18.16■□□□□ 0.5
NUP54-216ENST00000514901 ERFEQ4G0M1 354 aa18.16■□□□□ 0.5
NUP54-216ENST00000514901 NUTM1Q86Y26 1132 aa18.16■□□□□ 0.5
NUP54-216ENST00000514901 CWC25Q9NXE8 425 aaPredicted RBP18.16■□□□□ 0.5
NUP54-216ENST00000514901 ANKRD36CQ5JPF3 1778 aa18.16■□□□□ 0.5
NUP54-216ENST00000514901 SH3TC1Q8TE82 1336 aa18.16■□□□□ 0.5
NUP54-216ENST00000514901 ARFGEF2Q9Y6D5 1785 aa18.15■□□□□ 0.5
NUP54-216ENST00000514901 CHRNA5P30532 468 aa18.15■□□□□ 0.5
NUP54-216ENST00000514901 GRIN3BO60391 1043 aa18.14■□□□□ 0.49
NUP54-216ENST00000514901 DALRD3Q5D0E6 543 aaKnown RBP18.14■□□□□ 0.49
NUP54-216ENST00000514901 STYK1Q6J9G0 422 aa18.14■□□□□ 0.49
NUP54-216ENST00000514901 ZBTB38Q8NAP3 1195 aaPredicted RBP18.14■□□□□ 0.49
NUP54-216ENST00000514901 LINS1Q8NG48 757 aa18.14■□□□□ 0.49
NUP54-216ENST00000514901 MASTLQ96GX5 879 aa18.14■□□□□ 0.49
NUP54-216ENST00000514901 NLRP3Q96P20 1036 aa18.14■□□□□ 0.49
NUP54-216ENST00000514901 RIC1Q4ADV7 1423 aa18.14■□□□□ 0.49
NUP54-216ENST00000514901 IGKV5-2P06315 115 aa18.13■□□□□ 0.49
NUP54-216ENST00000514901 SRGNP10124 158 aa18.13■□□□□ 0.49
NUP54-216ENST00000514901 PELP1Q8IZL8 1130 aaKnown RBP18.13■□□□□ 0.49
NUP54-216ENST00000514901 CNKSR1Q969H4 720 aa18.13■□□□□ 0.49
NUP54-216ENST00000514901 BCL2L13Q9BXK5 485 aa18.13■□□□□ 0.49
NUP54-216ENST00000514901 NEURL1BA8MQ27 555 aa18.12■□□□□ 0.49
NUP54-216ENST00000514901 F6X3S4 739 aa18.12■□□□□ 0.49
NUP54-216ENST00000514901 PCCAP05165 728 aaPredicted RBP18.12■□□□□ 0.49
NUP54-216ENST00000514901 NPR1P16066 1061 aa18.12■□□□□ 0.49
NUP54-216ENST00000514901 CRY2Q49AN0 593 aa18.12■□□□□ 0.49
NUP54-216ENST00000514901 TTLL6Q8N841 843 aa18.12■□□□□ 0.49
NUP54-216ENST00000514901 ZNF622Q969S3 477 aaKnown RBP eCLIP18.12■□□□□ 0.49
NUP54-216ENST00000514901 FAM89AQ96GI7 184 aa18.12■□□□□ 0.49
NUP54-216ENST00000514901 N4BP2Q86UW6 1770 aaPredicted RBP18.12■□□□□ 0.49
NUP54-216ENST00000514901 ANKRD31Q8N7Z5 1873 aa18.12■□□□□ 0.49
NUP54-216ENST00000514901 BCS1LQ9Y276 419 aa18.11■□□□□ 0.49
NUP54-216ENST00000514901 ABCC12Q96J65 1359 aa18.11■□□□□ 0.49
NUP54-216ENST00000514901 KIAA1551Q9HCM1 1747 aa18.1■□□□□ 0.49
NUP54-216ENST00000514901 KIF16BQ96L93 1317 aa18.1■□□□□ 0.49
NUP54-216ENST00000514901 IRS4O14654 1257 aaPredicted RBP18.1■□□□□ 0.49
NUP54-216ENST00000514901 IPO8O15397 1037 aaKnown RBP18.1■□□□□ 0.49
NUP54-216ENST00000514901 ALDH1B1P30837 517 aa18.1■□□□□ 0.49
NUP54-216ENST00000514901 GCKRQ14397 625 aa18.1■□□□□ 0.49
NUP54-216ENST00000514901 CWF19L2Q2TBE0 894 aaKnown RBP18.1■□□□□ 0.49
NUP54-216ENST00000514901 BEND3Q5T5X7 828 aa18.1■□□□□ 0.49
NUP54-216ENST00000514901 ARHGAP45Q92619 1136 aa18.1■□□□□ 0.49
NUP54-216ENST00000514901 API5Q9BZZ5 524 aaKnown RBP18.1■□□□□ 0.49
NUP54-216ENST00000514901 NOB1Q9ULX3 412 aaKnown RBP18.1■□□□□ 0.49
NUP54-216ENST00000514901 GOLGB1Q14789 3259 aaKnown RBP18.1■□□□□ 0.49
NUP54-216ENST00000514901 ALDH1L1O75891 902 aa18.09■□□□□ 0.49
NUP54-216ENST00000514901 HCLS1P14317 486 aaPredicted RBP18.09■□□□□ 0.49
NUP54-216ENST00000514901 YBX3P16989 372 aaKnown RBP eCLIP18.09■□□□□ 0.49
NUP54-216ENST00000514901 HOXA10P31260 410 aaPredicted RBP18.09■□□□□ 0.49
NUP54-216ENST00000514901 SLC4A10Q6U841 1118 aa18.09■□□□□ 0.49
NUP54-216ENST00000514901 SYNE4Q8N205 404 aa18.09■□□□□ 0.49
NUP54-216ENST00000514901 RPGRQ92834 1020 aaKnown RBP18.09■□□□□ 0.49
NUP54-216ENST00000514901 H7C1W4 665 aa18.08■□□□□ 0.48
NUP54-216ENST00000514901 RBM17Q96I25 401 aaKnown RBP18.08■□□□□ 0.48
NUP54-216ENST00000514901 SRCIN1Q9C0H9 1055 aa18.08■□□□□ 0.48
NUP54-216ENST00000514901 CDHR2Q9BYE9 1310 aa18.07■□□□□ 0.48
NUP54-216ENST00000514901 SF3B3Q15393 1217 aaKnown RBP18.07■□□□□ 0.48
NUP54-216ENST00000514901 RTL5Q5HYW3 569 aaPredicted RBP18.07■□□□□ 0.48
NUP54-216ENST00000514901 CRAMP1Q96RY5 1269 aa18.07■□□□□ 0.48
NUP54-216ENST00000514901 WWC3Q9ULE0 1092 aa18.07■□□□□ 0.48
NUP54-216ENST00000514901 BRCA1P38398 1863 aaKnown RBP18.07■□□□□ 0.48
NUP54-216ENST00000514901 PDE8AO60658 829 aa18.06■□□□□ 0.48
NUP54-216ENST00000514901 BCAR3O75815 825 aa18.06■□□□□ 0.48
NUP54-216ENST00000514901 DLEC1Q9Y238 1755 aa18.05■□□□□ 0.48
NUP54-216ENST00000514901 SOGA3Q5TF21 947 aa18.05■□□□□ 0.48
NUP54-216ENST00000514901 C3orf67Q6ZVT6 689 aa18.05■□□□□ 0.48
NUP54-216ENST00000514901 DDX46Q7L014 1031 aaKnown RBP18.05■□□□□ 0.48
NUP54-216ENST00000514901 YTHDC1Q96MU7 727 aaKnown RBP18.05■□□□□ 0.48
NUP54-216ENST00000514901 CCT4P50991 539 aaKnown RBP18.04■□□□□ 0.48
NUP54-216ENST00000514901 PRPF40BQ6NWY9 871 aaKnown RBP18.04■□□□□ 0.48
NUP54-216ENST00000514901 UBE3BQ7Z3V4 1068 aa18.04■□□□□ 0.48
NUP54-216ENST00000514901 C9orf78Q9NZ63 289 aaPredicted RBP18.04■□□□□ 0.48
NUP54-216ENST00000514901 GRM8O00222 908 aa18.03■□□□□ 0.48
NUP54-216ENST00000514901 BBOX1O75936 387 aa18.03■□□□□ 0.48
NUP54-216ENST00000514901 CCDC152Q4G0S7 254 aa18.03■□□□□ 0.48
NUP54-216ENST00000514901 ATF7IPQ6VMQ6 1270 aa18.03■□□□□ 0.48
NUP54-216ENST00000514901 JARID2Q92833 1246 aaPredicted RBP18.03■□□□□ 0.48
NUP54-216ENST00000514901 PLA2G12BQ9BX93 195 aa18.03■□□□□ 0.48
NUP54-216ENST00000514901 UTRNP46939 3433 aa18.03■□□□□ 0.48
NUP54-216ENST00000514901 COL11A2P13942 1736 aaPredicted RBP18.02■□□□□ 0.48
NUP54-216ENST00000514901 CASP7P55210 303 aa18.02■□□□□ 0.48
NUP54-216ENST00000514901 ZKSCAN2Q63HK3 967 aa18.02■□□□□ 0.48
NUP54-216ENST00000514901 CC2D2BQ6DHV5 1058 aa18.02■□□□□ 0.48
NUP54-216ENST00000514901 ARHGAP27Q6ZUM4 889 aa18.02■□□□□ 0.48
NUP54-216ENST00000514901 FRAT1Q92837 279 aaPredicted RBP18.02■□□□□ 0.48
NUP54-216ENST00000514901 ARFGEF1Q9Y6D6 1849 aa18.02■□□□□ 0.47
NUP54-216ENST00000514901 TNRC6CQ9HCJ0 1690 aaKnown RBP18.02■□□□□ 0.47
NUP54-216ENST00000514901 GRIPAP1Q4V328 841 aa18.01■□□□□ 0.47
NUP54-216ENST00000514901 C7orf43Q8WVR3 580 aa18.01■□□□□ 0.47
NUP54-216ENST00000514901 TMX4Q9H1E5 349 aaPredicted RBP18.01■□□□□ 0.47
NUP54-216ENST00000514901 RCAN3Q9UKA8 241 aa18.01■□□□□ 0.47
NUP54-216ENST00000514901 C21orf2O43822 256 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms