RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TBC1D8BQ0IIM8 1120 aa9.42□□□□□ -0.9
VPS50-219ENST00000495039 HDGFL1Q5TGJ6 251 aa9.42□□□□□ -0.9
VPS50-219ENST00000495039 ALDH16A1Q8IZ83 802 aa9.42□□□□□ -0.9
VPS50-219ENST00000495039 STAG2Q8N3U4 1231 aa9.42□□□□□ -0.9
VPS50-219ENST00000495039 ZNF594Q96JF6 807 aaPredicted RBP9.42□□□□□ -0.9
VPS50-219ENST00000495039 RAC1P63000 192 aa9.41□□□□□ -0.9
VPS50-219ENST00000495039 FLIIQ13045 1269 aa9.41□□□□□ -0.9
VPS50-219ENST00000495039 BTLAQ7Z6A9 289 aa9.41□□□□□ -0.9
VPS50-219ENST00000495039 SLC6A14Q9UN76 642 aa9.41□□□□□ -0.9
VPS50-219ENST00000495039 A0A0A0MRY4 1105 aa9.4□□□□□ -0.9
VPS50-219ENST00000495039 C21orf2O43822 256 aa9.4□□□□□ -0.9
VPS50-219ENST00000495039 ADGRE1Q14246 886 aa9.4□□□□□ -0.9
VPS50-219ENST00000495039 FOXD4L6Q3SYB3 417 aaPredicted RBP9.4□□□□□ -0.9
VPS50-219ENST00000495039 FOXD4L3Q6VB84 417 aaPredicted RBP9.4□□□□□ -0.9
VPS50-219ENST00000495039 GAS2L2Q8NHY3 880 aa9.4□□□□□ -0.9
VPS50-219ENST00000495039 IGFLR1Q9H665 355 aa9.4□□□□□ -0.9
VPS50-219ENST00000495039 JPH1Q9HDC5 661 aaPredicted RBP9.4□□□□□ -0.9
VPS50-219ENST00000495039 NRG1Q02297 640 aaPredicted RBP9.39□□□□□ -0.91
VPS50-219ENST00000495039 MBTPS1Q14703 1052 aa9.39□□□□□ -0.91
VPS50-219ENST00000495039 PRSS36Q5K4E3 855 aa9.39□□□□□ -0.91
VPS50-219ENST00000495039 C2orf49Q9BVC5 232 aaPredicted RBP9.39□□□□□ -0.91
VPS50-219ENST00000495039 ATAD2Q6PL18 1390 aa9.38□□□□□ -0.91
VPS50-219ENST00000495039 H2AFB1P0C5Y9 115 aa9.38□□□□□ -0.91
VPS50-219ENST00000495039 H2AFB2P0C5Z0 115 aa9.38□□□□□ -0.91
VPS50-219ENST00000495039 TXNRD3Q86VQ6 643 aa9.38□□□□□ -0.91
VPS50-219ENST00000495039 PNMA5Q96PV4 448 aa9.38□□□□□ -0.91
VPS50-219ENST00000495039 DKK1O94907 266 aa9.37□□□□□ -0.91
VPS50-219ENST00000495039 SELPP16109 830 aa9.37□□□□□ -0.91
VPS50-219ENST00000495039 ARTNQ5T4W7 220 aa9.37□□□□□ -0.91
VPS50-219ENST00000495039 IER5Q5VY09 327 aa9.37□□□□□ -0.91
VPS50-219ENST00000495039 NUDT8Q8WV74 236 aa9.37□□□□□ -0.91
VPS50-219ENST00000495039 SCG3Q8WXD2 468 aaKnown RBP9.37□□□□□ -0.91
VPS50-219ENST00000495039 LENG1Q96BZ8 264 aaPredicted RBP9.37□□□□□ -0.91
VPS50-219ENST00000495039 NGLY1Q96IV0 654 aa9.37□□□□□ -0.91
VPS50-219ENST00000495039 ZFP64Q9NPA5 681 aa9.37□□□□□ -0.91
VPS50-219ENST00000495039 RASA1P20936 1047 aa9.36□□□□□ -0.91
VPS50-219ENST00000495039 SEC13P55735 322 aa9.36□□□□□ -0.91
VPS50-219ENST00000495039 CHMP7Q8WUX9 453 aaPredicted RBP9.36□□□□□ -0.91
VPS50-219ENST00000495039 DNAJB12Q9NXW2 375 aaKnown RBP9.36□□□□□ -0.91
VPS50-219ENST00000495039 RTN1Q16799 776 aa9.35□□□□□ -0.91
VPS50-219ENST00000495039 PSAPL1Q6NUJ1 521 aa9.35□□□□□ -0.91
VPS50-219ENST00000495039 GSX2Q9BZM3 304 aa9.35□□□□□ -0.91
VPS50-219ENST00000495039 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.35□□□□□ -0.91
VPS50-219ENST00000495039 TGFBR3LH3BV60 316 aa9.34□□□□□ -0.91
VPS50-219ENST00000495039 AFF1P51825 1210 aaKnown RBP9.34□□□□□ -0.91
VPS50-219ENST00000495039 CCINQ13939 588 aa9.34□□□□□ -0.91
VPS50-219ENST00000495039 NAGPAQ9UK23 515 aa9.34□□□□□ -0.91
VPS50-219ENST00000495039 RGS9O75916 674 aaPredicted RBP9.33□□□□□ -0.92
VPS50-219ENST00000495039 EPB42P16452 691 aa9.33□□□□□ -0.92
VPS50-219ENST00000495039 NFKB1P19838 968 aa9.33□□□□□ -0.92
VPS50-219ENST00000495039 SHISA2Q6UWI4 295 aa9.33□□□□□ -0.92
VPS50-219ENST00000495039 FMR1NBQ8N0W7 255 aaPredicted RBP9.33□□□□□ -0.92
VPS50-219ENST00000495039 USP21Q9UK80 565 aa9.33□□□□□ -0.92
VPS50-219ENST00000495039 PCSK7Q16549 785 aa9.32□□□□□ -0.92
VPS50-219ENST00000495039 LARP1Q6PKG0 1096 aaKnown RBP9.31□□□□□ -0.92
VPS50-219ENST00000495039 NBPF11Q86T75 865 aa9.31□□□□□ -0.92
VPS50-219ENST00000495039 DMRTC2Q8IXT2 367 aaPredicted RBP9.31□□□□□ -0.92
VPS50-219ENST00000495039 TP53INP1Q96A56 240 aa9.31□□□□□ -0.92
VPS50-219ENST00000495039 HINFPQ9BQA5 517 aa9.31□□□□□ -0.92
VPS50-219ENST00000495039 FAM35AQ86V20 835 aa9.3□□□□□ -0.92
VPS50-219ENST00000495039 GLMNQ92990 594 aa9.3□□□□□ -0.92
VPS50-219ENST00000495039 TFIP11Q9UBB9 837 aaKnown RBP9.3□□□□□ -0.92
VPS50-219ENST00000495039 DMGDHQ9UI17 866 aaKnown RBP9.3□□□□□ -0.92
VPS50-219ENST00000495039 MAFBQ9Y5Q3 323 aaPredicted RBP9.3□□□□□ -0.92
VPS50-219ENST00000495039 MSL1Q68DK7 614 aa9.29□□□□□ -0.92
VPS50-219ENST00000495039 ILDR2Q71H61 639 aa9.29□□□□□ -0.92
VPS50-219ENST00000495039 DTWD1Q8N5C7 304 aa9.29□□□□□ -0.92
VPS50-219ENST00000495039 KRTAP9-2Q9BYQ4 174 aa9.29□□□□□ -0.92
VPS50-219ENST00000495039 BCS1LQ9Y276 419 aa9.29□□□□□ -0.92
VPS50-219ENST00000495039 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.28□□□□□ -0.92
VPS50-219ENST00000495039 IGFBP4P22692 258 aa9.28□□□□□ -0.92
VPS50-219ENST00000495039 LRP8Q14114 963 aa9.28□□□□□ -0.92
VPS50-219ENST00000495039 FRRS1LQ9P0K9 344 aa9.28□□□□□ -0.92
VPS50-219ENST00000495039 MAP3K6O95382 1288 aa9.27□□□□□ -0.93
VPS50-219ENST00000495039 CPB1P15086 417 aa9.27□□□□□ -0.93
VPS50-219ENST00000495039 SSBP4Q9BWG4 385 aaPredicted RBP9.27□□□□□ -0.93
VPS50-219ENST00000495039 INPP5BP32019 993 aa9.26□□□□□ -0.93
VPS50-219ENST00000495039 IDH3AP50213 366 aa9.26□□□□□ -0.93
VPS50-219ENST00000495039 C11orf16Q9NQ32 467 aa9.26□□□□□ -0.93
VPS50-219ENST00000495039 DPYDQ12882 1025 aa9.25□□□□□ -0.93
VPS50-219ENST00000495039 PTK7Q13308 1070 aa9.25□□□□□ -0.93
VPS50-219ENST00000495039 CRTC2Q53ET0 693 aaPredicted RBP9.25□□□□□ -0.93
VPS50-219ENST00000495039 DHX32Q7L7V1 743 aaKnown RBP9.25□□□□□ -0.93
VPS50-219ENST00000495039 FBXO11Q86XK2 927 aa9.25□□□□□ -0.93
VPS50-219ENST00000495039 TRPM4Q8TD43 1214 aa9.25□□□□□ -0.93
VPS50-219ENST00000495039 LPIN3Q9BQK8 851 aa9.25□□□□□ -0.93
VPS50-219ENST00000495039 GRNP28799 593 aaKnown RBP9.24□□□□□ -0.93
VPS50-219ENST00000495039 ARSDP51689 593 aa9.24□□□□□ -0.93
VPS50-219ENST00000495039 GRIK5Q16478 980 aa9.24□□□□□ -0.93
VPS50-219ENST00000495039 ELMSAN1Q6PJG2 1045 aa9.24□□□□□ -0.93
VPS50-219ENST00000495039 KRT25Q7Z3Z0 450 aa9.24□□□□□ -0.93
VPS50-219ENST00000495039 PROSER2Q86WR7 435 aaPredicted RBP9.24□□□□□ -0.93
VPS50-219ENST00000495039 WFDC8Q8IUA0 241 aa9.24□□□□□ -0.93
VPS50-219ENST00000495039 KLK14Q9P0G3 267 aa9.24□□□□□ -0.93
VPS50-219ENST00000495039 KRTAP9-6A0A140TA67 174 aa9.23□□□□□ -0.93
VPS50-219ENST00000495039 LGR5O75473 907 aa9.23□□□□□ -0.93
VPS50-219ENST00000495039 ARID4AP29374 1257 aaPredicted RBP9.23□□□□□ -0.93
VPS50-219ENST00000495039 GPLD1P80108 840 aa9.23□□□□□ -0.93
VPS50-219ENST00000495039 PERM1Q5SV97 790 aa9.23□□□□□ -0.93
VPS50-219ENST00000495039 WFDC12Q8WWY7 111 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 153 ms