RNA–Protein interactions for RNA: ENST00000494815.1

TSPAN4-212, Transcript of tetraspanin 4, humanhuman

TSL 2

Gene TSPAN4, Length 2,187 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-212ENST00000494815 SMARCC1Q92922 1105 aaPredicted RBP22.65■■□□□ 1.22
TSPAN4-212ENST00000494815 COPRSQ9NQ92 184 aa22.65■■□□□ 1.22
TSPAN4-212ENST00000494815 TUBGCP6Q96RT7 1819 aa22.65■■□□□ 1.22
TSPAN4-212ENST00000494815 HSPA1LP34931 641 aa22.65■■□□□ 1.22
TSPAN4-212ENST00000494815 NUTM1Q86Y26 1132 aa22.65■■□□□ 1.22
TSPAN4-212ENST00000494815 ZBTB1Q9Y2K1 713 aa22.65■■□□□ 1.22
TSPAN4-212ENST00000494815 TSHZ3Q63HK5 1081 aa22.64■■□□□ 1.21
TSPAN4-212ENST00000494815 TBC1D2Q9BYX2 928 aa22.64■■□□□ 1.21
TSPAN4-212ENST00000494815 A0A0G2JS52 829 aa22.63■■□□□ 1.21
TSPAN4-212ENST00000494815 GIGYF2Q6Y7W6 1299 aaKnown RBP22.63■■□□□ 1.21
TSPAN4-212ENST00000494815 JARID2Q92833 1246 aaPredicted RBP22.63■■□□□ 1.21
TSPAN4-212ENST00000494815 TTC41PQ6P2S7 1318 aa22.63■■□□□ 1.21
TSPAN4-212ENST00000494815 PALLDQ8WX93 1383 aa22.63■■□□□ 1.21
TSPAN4-212ENST00000494815 LOC102724428A0A0B4J2F2 783 aa22.63■■□□□ 1.21
TSPAN4-212ENST00000494815 RFX5P48382 616 aaPredicted RBP22.63■■□□□ 1.21
TSPAN4-212ENST00000494815 SIK1P57059 783 aa22.63■■□□□ 1.21
TSPAN4-212ENST00000494815 HSP90AB3PQ58FF7 597 aa22.63■■□□□ 1.21
TSPAN4-212ENST00000494815 THSD7AQ9UPZ6 1657 aa22.62■■□□□ 1.21
TSPAN4-212ENST00000494815 SASH1O94885 1247 aa22.62■■□□□ 1.21
TSPAN4-212ENST00000494815 FOXO4P98177 505 aa22.62■■□□□ 1.21
TSPAN4-212ENST00000494815 MEX3CQ5U5Q3 659 aaKnown RBP22.62■■□□□ 1.21
TSPAN4-212ENST00000494815 PI4K2BQ8TCG2 481 aa22.62■■□□□ 1.21
TSPAN4-212ENST00000494815 ATP6V1AP38606 617 aa22.61■■□□□ 1.21
TSPAN4-212ENST00000494815 ERVV-1B6SEH8 477 aa22.6■■□□□ 1.21
TSPAN4-212ENST00000494815 PTPN12Q05209 780 aaKnown RBP22.6■■□□□ 1.21
TSPAN4-212ENST00000494815 LMBR1LQ6UX01 489 aa22.6■■□□□ 1.21
TSPAN4-212ENST00000494815 GPATCH3Q96I76 525 aa22.6■■□□□ 1.21
TSPAN4-212ENST00000494815 CCDC87Q9NVE4 849 aa22.6■■□□□ 1.21
TSPAN4-212ENST00000494815 IFIT2P09913 472 aaKnown RBP22.59■■□□□ 1.21
TSPAN4-212ENST00000494815 ERC2O15083 957 aa22.59■■□□□ 1.21
TSPAN4-212ENST00000494815 KCNQ2O43526 872 aa22.59■■□□□ 1.21
TSPAN4-212ENST00000494815 GLRX3O76003 335 aaKnown RBP22.59■■□□□ 1.21
TSPAN4-212ENST00000494815 PCCAP05165 728 aaPredicted RBP22.59■■□□□ 1.21
TSPAN4-212ENST00000494815 SIL1Q9H173 461 aa22.59■■□□□ 1.21
TSPAN4-212ENST00000494815 ZNF831Q5JPB2 1677 aa22.58■■□□□ 1.21
TSPAN4-212ENST00000494815 RREB1Q92766 1687 aa22.58■■□□□ 1.21
TSPAN4-212ENST00000494815 TRIM6-TRIM34B2RNG4 842 aa22.58■■□□□ 1.21
TSPAN4-212ENST00000494815 EIF5P55010 431 aaKnown RBP22.58■■□□□ 1.21
TSPAN4-212ENST00000494815 INTS5Q6P9B9 1019 aaKnown RBP22.58■■□□□ 1.21
TSPAN4-212ENST00000494815 KLHDC4Q8TBB5 520 aa22.58■■□□□ 1.21
TSPAN4-212ENST00000494815 ARXQ96QS3 562 aa22.58■■□□□ 1.21
TSPAN4-212ENST00000494815 REC8O95072 547 aa22.57■■□□□ 1.2
TSPAN4-212ENST00000494815 AACSQ86V21 672 aa22.57■■□□□ 1.2
TSPAN4-212ENST00000494815 ECHDC1Q9NTX5 307 aa22.57■■□□□ 1.2
TSPAN4-212ENST00000494815 CRKLP46109 303 aaKnown RBP22.57■■□□□ 1.2
TSPAN4-212ENST00000494815 DZIP3Q86Y13 1208 aaKnown RBP22.57■■□□□ 1.2
TSPAN4-212ENST00000494815 GJD4Q96KN9 370 aaPredicted RBP22.57■■□□□ 1.2
TSPAN4-212ENST00000494815 AFF2P51816 1311 aa22.56■■□□□ 1.2
TSPAN4-212ENST00000494815 HLFQ16534 295 aa22.56■■□□□ 1.2
TSPAN4-212ENST00000494815 ZBTB38Q8NAP3 1195 aaPredicted RBP22.56■■□□□ 1.2
TSPAN4-212ENST00000494815 RILPL2Q969X0 211 aa22.56■■□□□ 1.2
TSPAN4-212ENST00000494815 PLA2G12BQ9BX93 195 aa22.56■■□□□ 1.2
TSPAN4-212ENST00000494815 ITPK1Q13572 414 aa22.56■■□□□ 1.2
TSPAN4-212ENST00000494815 EAF2Q96CJ1 260 aaPredicted RBP22.55■■□□□ 1.2
TSPAN4-212ENST00000494815 ANKRD36CQ5JPF3 1778 aa22.55■■□□□ 1.2
TSPAN4-212ENST00000494815 NLRP10Q86W26 655 aa22.55■■□□□ 1.2
TSPAN4-212ENST00000494815 CDHR2Q9BYE9 1310 aa22.54■■□□□ 1.2
TSPAN4-212ENST00000494815 CHMLP26374 656 aa22.54■■□□□ 1.2
TSPAN4-212ENST00000494815 CNTROBQ8N137 903 aa22.54■■□□□ 1.2
TSPAN4-212ENST00000494815 USP26Q9BXU7 913 aa22.54■■□□□ 1.2
TSPAN4-212ENST00000494815 ATRNO75882 1429 aa22.54■■□□□ 1.2
TSPAN4-212ENST00000494815 CHMP3Q9Y3E7 222 aa22.53■■□□□ 1.2
TSPAN4-212ENST00000494815 ONECUT3O60422 494 aaPredicted RBP22.52■■□□□ 1.2
TSPAN4-212ENST00000494815 ESYT1Q9BSJ8 1104 aa22.52■■□□□ 1.2
TSPAN4-212ENST00000494815 TRPC5Q9UL62 973 aaPredicted RBP22.52■■□□□ 1.2
TSPAN4-212ENST00000494815 TBC1D2BQ9UPU7 963 aa22.52■■□□□ 1.2
TSPAN4-212ENST00000494815 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.52■■□□□ 1.2
TSPAN4-212ENST00000494815 MCM4P33991 863 aa22.52■■□□□ 1.2
TSPAN4-212ENST00000494815 KIF2CQ99661 725 aa22.52■■□□□ 1.2
TSPAN4-212ENST00000494815 NUP98P52948 1817 aa22.51■■□□□ 1.19
TSPAN4-212ENST00000494815 FAM89AQ96GI7 184 aa22.51■■□□□ 1.19
TSPAN4-212ENST00000494815 COL5A3P25940 1745 aaPredicted RBP22.51■■□□□ 1.19
TSPAN4-212ENST00000494815 GPTP24298 496 aa22.5■■□□□ 1.19
TSPAN4-212ENST00000494815 FSD2A1L4K1 749 aa22.5■■□□□ 1.19
TSPAN4-212ENST00000494815 ZNF34Q8IZ26 560 aa22.5■■□□□ 1.19
TSPAN4-212ENST00000494815 RRAGDQ9NQL2 400 aaPredicted RBP22.5■■□□□ 1.19
TSPAN4-212ENST00000494815 NHSQ6T4R5 1651 aa22.5■■□□□ 1.19
TSPAN4-212ENST00000494815 MYH14Q7Z406 1995 aaKnown RBP22.49■■□□□ 1.19
TSPAN4-212ENST00000494815 GOLGA6L3A6NEY3 463 aa22.49■■□□□ 1.19
TSPAN4-212ENST00000494815 CIAO1O76071 339 aa22.49■■□□□ 1.19
TSPAN4-212ENST00000494815 CSF1RP07333 972 aa22.49■■□□□ 1.19
TSPAN4-212ENST00000494815 IL15P40933 162 aaPredicted RBP22.49■■□□□ 1.19
TSPAN4-212ENST00000494815 TFCP2Q12800 502 aa22.49■■□□□ 1.19
TSPAN4-212ENST00000494815 TNNI3KQ59H18 835 aa22.49■■□□□ 1.19
TSPAN4-212ENST00000494815 CCDC8Q9H0W5 538 aaPredicted RBP22.49■■□□□ 1.19
TSPAN4-212ENST00000494815 CHMP5Q9NZZ3 219 aa22.49■■□□□ 1.19
TSPAN4-212ENST00000494815 FBXO3Q9UK99 471 aa22.49■■□□□ 1.19
TSPAN4-212ENST00000494815 FPGT-TNNI3KV9GXZ4 949 aa22.49■■□□□ 1.19
TSPAN4-212ENST00000494815 SNX21Q969T3 373 aa22.49■■□□□ 1.19
TSPAN4-212ENST00000494815 AK9Q5TCS8 1911 aa22.48■■□□□ 1.19
TSPAN4-212ENST00000494815 EPB41L2O43491 1005 aaKnown RBP22.48■■□□□ 1.19
TSPAN4-212ENST00000494815 ATG9AQ7Z3C6 839 aa22.48■■□□□ 1.19
TSPAN4-212ENST00000494815 GPR108Q9NPR9 543 aa22.48■■□□□ 1.19
TSPAN4-212ENST00000494815 EYA2O00167 538 aa22.48■■□□□ 1.19
TSPAN4-212ENST00000494815 CCDC57Q2TAC2 916 aa22.48■■□□□ 1.19
TSPAN4-212ENST00000494815 TLR7Q9NYK1 1049 aaKnown RBP22.48■■□□□ 1.19
TSPAN4-212ENST00000494815 CAMTA2O94983 1202 aa22.47■■□□□ 1.19
TSPAN4-212ENST00000494815 EVI5LQ96CN4 794 aa22.47■■□□□ 1.19
TSPAN4-212ENST00000494815 TRMT112Q9UI30 125 aaKnown RBP22.47■■□□□ 1.19
TSPAN4-212ENST00000494815 MAP4K4O95819 1239 aaPredicted RBP22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms