RNA–Protein interactions for RNA: ENST00000493853.1

RBM39-238, Transcript of RNA binding motif protein 39, human

TSL 4

Gene RBM39, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-238	ENST00000493853	KMT5B	Q4FZB7	885 aa		10.23	□□□□□ -0.77
RBM39-238	ENST00000493853	C1orf141	Q5JVX7	400 aa		10.23	□□□□□ -0.77
RBM39-238	ENST00000493853	ZNF530	Q6P9A1	599 aa	Predicted RBP	10.23	□□□□□ -0.77
RBM39-238	ENST00000493853	DCAF5	Q96JK2	942 aa		10.23	□□□□□ -0.77
RBM39-238	ENST00000493853	ASAP1	Q9ULH1	1129 aa		10.23	□□□□□ -0.77
RBM39-238	ENST00000493853	GRIN3B	O60391	1043 aa		10.22	□□□□□ -0.77
RBM39-238	ENST00000493853	MTHFS	P49914	203 aa		10.22	□□□□□ -0.77
RBM39-238	ENST00000493853	COPS2	P61201	443 aa		10.22	□□□□□ -0.77
RBM39-238	ENST00000493853	IGSF1	Q8N6C5	1336 aa		10.22	□□□□□ -0.77
RBM39-238	ENST00000493853	PAPPA	Q13219	1627 aa		10.22	□□□□□ -0.77
RBM39-238	ENST00000493853	MYOM1	P52179	1685 aa		10.22	□□□□□ -0.77
RBM39-238	ENST00000493853	KIF20B	Q96Q89	1820 aa		10.21	□□□□□ -0.77
RBM39-238	ENST00000493853	CFH	P08603	1231 aa		10.21	□□□□□ -0.77
RBM39-238	ENST00000493853	SSFA2	P28290	1259 aa		10.21	□□□□□ -0.77
RBM39-238	ENST00000493853	SULT6B1	Q6IMI4	303 aa		10.21	□□□□□ -0.77
RBM39-238	ENST00000493853	ZNF784	Q8NCA9	323 aa	Predicted RBP	10.21	□□□□□ -0.77
RBM39-238	ENST00000493853	NLGN2	Q8NFZ4	835 aa		10.21	□□□□□ -0.77
RBM39-238	ENST00000493853	NLRP7	Q8WX94	980 aa		10.21	□□□□□ -0.77
RBM39-238	ENST00000493853	ATG3	Q9NT62	314 aa		10.21	□□□□□ -0.77
RBM39-238	ENST00000493853	DAXX	Q9UER7	740 aa	Predicted RBP	10.21	□□□□□ -0.77
RBM39-238	ENST00000493853	PCDHB3	Q9Y5E6	796 aa		10.21	□□□□□ -0.77
RBM39-238	ENST00000493853	RGPD2	P0DJD1	1756 aa		10.21	□□□□□ -0.78
RBM39-238	ENST00000493853	SLC10A3	P09131	477 aa		10.2	□□□□□ -0.78
RBM39-238	ENST00000493853	MAP2K5	Q13163	448 aa		10.2	□□□□□ -0.78
RBM39-238	ENST00000493853	CNGB1	Q14028	1251 aa	Predicted RBP	10.2	□□□□□ -0.78
RBM39-238	ENST00000493853	NCAPD2	Q15021	1401 aa		10.2	□□□□□ -0.78
RBM39-238	ENST00000493853	LINC00116	Q8NCU8	138 aa		10.2	□□□□□ -0.78
RBM39-238	ENST00000493853	DOT1L	Q8TEK3	1739 aa		10.2	□□□□□ -0.78
RBM39-238	ENST00000493853	ZNF516	Q92618	1163 aa		10.2	□□□□□ -0.78
RBM39-238	ENST00000493853	RTCB	Q9Y3I0	505 aa	Known RBP	10.2	□□□□□ -0.78
RBM39-238	ENST00000493853	CD2AP	Q9Y5K6	639 aa		10.2	□□□□□ -0.78
RBM39-238	ENST00000493853	PLEKHG2	Q9H7P9	1386 aa		10.19	□□□□□ -0.78
RBM39-238	ENST00000493853	KIF7	Q2M1P5	1343 aa		10.19	□□□□□ -0.78
RBM39-238	ENST00000493853	ITPK1	Q13572	414 aa		10.19	□□□□□ -0.78
RBM39-238	ENST00000493853	CC2D1B	Q5T0F9	858 aa	Known RBP	10.19	□□□□□ -0.78
RBM39-238	ENST00000493853	TRAPPC3L	Q5T215	181 aa		10.19	□□□□□ -0.78
RBM39-238	ENST00000493853	SMIM5	Q71RC9	77 aa		10.19	□□□□□ -0.78
RBM39-238	ENST00000493853	AEBP1	Q8IUX7	1158 aa		10.19	□□□□□ -0.78
RBM39-238	ENST00000493853	PHOX2B	Q99453	314 aa		10.19	□□□□□ -0.78
RBM39-238	ENST00000493853	PTCD1	O75127	700 aa	Known RBP	10.18	□□□□□ -0.78
RBM39-238	ENST00000493853	RGS20	O76081	388 aa		10.18	□□□□□ -0.78
RBM39-238	ENST00000493853	RDH13	Q8NBN7	331 aa		10.18	□□□□□ -0.78
RBM39-238	ENST00000493853	NFATC2IP	Q8NCF5	419 aa		10.18	□□□□□ -0.78
RBM39-238	ENST00000493853	DDX11L8	A8MPP1	907 aa		10.17	□□□□□ -0.78
RBM39-238	ENST00000493853	IRF6	O14896	467 aa		10.17	□□□□□ -0.78
RBM39-238	ENST00000493853	ACTN4	O43707	911 aa	Known RBP	10.17	□□□□□ -0.78
RBM39-238	ENST00000493853	IL13	P35225	146 aa		10.17	□□□□□ -0.78
RBM39-238	ENST00000493853	RFC4	P35249	363 aa		10.17	□□□□□ -0.78
RBM39-238	ENST00000493853	DIAPH1	O60610	1272 aa	Known RBP	10.16	□□□□□ -0.78
RBM39-238	ENST00000493853	HMOX1	P09601	288 aa		10.16	□□□□□ -0.78
RBM39-238	ENST00000493853	YBX3	P16989	372 aa	Known RBP eCLIP	10.16	□□□□□ -0.78
RBM39-238	ENST00000493853	RC3H1	Q5TC82	1133 aa	Known RBP	10.16	□□□□□ -0.78
RBM39-238	ENST00000493853	BLOC1S3	Q6QNY0	202 aa		10.16	□□□□□ -0.78
RBM39-238	ENST00000493853	AMIGO3	Q86WK7	504 aa		10.16	□□□□□ -0.78
RBM39-238	ENST00000493853	NLGN1	Q8N2Q7	840 aa		10.16	□□□□□ -0.78
RBM39-238	ENST00000493853	LY75	O60449	1722 aa		10.16	□□□□□ -0.78
RBM39-238	ENST00000493853	SHANK3	Q9BYB0	1731 aa		10.16	□□□□□ -0.78
RBM39-238	ENST00000493853	ZPR1	O75312	459 aa		10.15	□□□□□ -0.78
RBM39-238	ENST00000493853	RPS6KA4	O75676	772 aa		10.15	□□□□□ -0.78
RBM39-238	ENST00000493853	AKAP4	Q5JQC9	854 aa		10.15	□□□□□ -0.78
RBM39-238	ENST00000493853	U2SURP	O15042	1029 aa	Known RBP	10.14	□□□□□ -0.79
RBM39-238	ENST00000493853	PER1	O15534	1290 aa	Predicted RBP	10.14	□□□□□ -0.79
RBM39-238	ENST00000493853	MMP10	P09238	476 aa		10.14	□□□□□ -0.79
RBM39-238	ENST00000493853	SULF1	Q8IWU6	871 aa		10.14	□□□□□ -0.79
RBM39-238	ENST00000493853	KRI1	Q8N9T8	703 aa	Known RBP	10.14	□□□□□ -0.79
RBM39-238	ENST00000493853	NKX2-3	Q8TAU0	364 aa		10.14	□□□□□ -0.79
RBM39-238	ENST00000493853	SLC4A9	Q96Q91	983 aa		10.14	□□□□□ -0.79
RBM39-238	ENST00000493853	WWC3	Q9ULE0	1092 aa		10.14	□□□□□ -0.79
RBM39-238	ENST00000493853	MAP2	P11137	1827 aa	Known RBP	10.14	□□□□□ -0.79
RBM39-238	ENST00000493853	GIGYF1	O75420	1035 aa	Predicted RBP	10.13	□□□□□ -0.79
RBM39-238	ENST00000493853	CRKL	P46109	303 aa	Known RBP	10.13	□□□□□ -0.79
RBM39-238	ENST00000493853	CCDC87	Q9NVE4	849 aa		10.13	□□□□□ -0.79
RBM39-238	ENST00000493853	PARP3	Q9Y6F1	533 aa		10.13	□□□□□ -0.79
RBM39-238	ENST00000493853	PKD1L3	Q7Z443	1732 aa		10.13	□□□□□ -0.79
RBM39-238	ENST00000493853	CNTNAP4	Q9C0A0	1308 aa		10.12	□□□□□ -0.79
RBM39-238	ENST00000493853	RNMT	O43148	476 aa	Known RBP	10.12	□□□□□ -0.79
RBM39-238	ENST00000493853	PPP1R18	Q6NYC8	613 aa		10.12	□□□□□ -0.79
RBM39-238	ENST00000493853	CCDC102A	Q96A19	550 aa		10.12	□□□□□ -0.79
RBM39-238	ENST00000493853	CFAP53	Q96M91	514 aa		10.12	□□□□□ -0.79
RBM39-238	ENST00000493853	SLC52A2	Q9HAB3	445 aa		10.12	□□□□□ -0.79
RBM39-238	ENST00000493853	LGR6	Q9HBX8	967 aa		10.12	□□□□□ -0.79
RBM39-238	ENST00000493853	C4B	P0C0L5	1744 aa		10.12	□□□□□ -0.79
RBM39-238	ENST00000493853	ANKRD26	Q9UPS8	1709 aa		10.12	□□□□□ -0.79
RBM39-238	ENST00000493853	KDR	P35968	1356 aa		10.12	□□□□□ -0.79
RBM39-238	ENST00000493853	QSER1	Q2KHR3	1735 aa		10.11	□□□□□ -0.79
RBM39-238	ENST00000493853	KDM6A	O15550	1401 aa	Predicted RBP	10.11	□□□□□ -0.79
RBM39-238	ENST00000493853	C1QTNF8	P60827	252 aa		10.11	□□□□□ -0.79
RBM39-238	ENST00000493853	TGFB2	P61812	414 aa		10.11	□□□□□ -0.79
RBM39-238	ENST00000493853	MTHFSD	Q2M296	383 aa	Known RBP	10.11	□□□□□ -0.79
RBM39-238	ENST00000493853	C5	P01031	1676 aa		10.11	□□□□□ -0.79
RBM39-238	ENST00000493853	SENP3-EIF4A1	A0A087X0R7	540 aa		10.1	□□□□□ -0.79
RBM39-238	ENST00000493853	GYS1	P13807	737 aa		10.1	□□□□□ -0.79
RBM39-238	ENST00000493853	GGCX	P38435	758 aa		10.1	□□□□□ -0.79
RBM39-238	ENST00000493853	MDM2	Q00987	491 aa	Predicted RBP	10.1	□□□□□ -0.79
RBM39-238	ENST00000493853	TEF	Q10587	303 aa		10.1	□□□□□ -0.79
RBM39-238	ENST00000493853	SLC39A6	Q13433	755 aa		10.1	□□□□□ -0.79
RBM39-238	ENST00000493853	TTC5	Q8N0Z6	440 aa		10.1	□□□□□ -0.79
RBM39-238	ENST00000493853	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.1	□□□□□ -0.79
RBM39-238	ENST00000493853	NUDC	Q9Y266	331 aa		10.1	□□□□□ -0.79
RBM39-238	ENST00000493853	BCS1L	Q9Y276	419 aa		10.1	□□□□□ -0.79

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