RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 BRCA1P38398 1863 aaKnown RBP20.37■□□□□ 0.85
UPF3A-208ENST00000484246 HNRNPUQ00839 825 aaKnown RBP eCLIP20.36■□□□□ 0.85
UPF3A-208ENST00000484246 CRY2Q49AN0 593 aa20.36■□□□□ 0.85
UPF3A-208ENST00000484246 SLC10A5Q5PT55 438 aa20.36■□□□□ 0.85
UPF3A-208ENST00000484246 G2E3Q7L622 706 aa20.36■□□□□ 0.85
UPF3A-208ENST00000484246 ARFGEF2Q9Y6D5 1785 aa20.36■□□□□ 0.85
UPF3A-208ENST00000484246 ZBED9Q6R2W3 1325 aa20.35■□□□□ 0.85
UPF3A-208ENST00000484246 TCERG1O14776 1098 aaKnown RBP20.35■□□□□ 0.85
UPF3A-208ENST00000484246 SRGNP10124 158 aa20.35■□□□□ 0.85
UPF3A-208ENST00000484246 STYK1Q6J9G0 422 aa20.35■□□□□ 0.85
UPF3A-208ENST00000484246 CCDC24Q8N4L8 307 aa20.35■□□□□ 0.85
UPF3A-208ENST00000484246 METTL22Q9BUU2 404 aaPredicted RBP20.35■□□□□ 0.85
UPF3A-208ENST00000484246 N4BP2Q86UW6 1770 aaPredicted RBP20.35■□□□□ 0.85
UPF3A-208ENST00000484246 COL11A2P13942 1736 aaPredicted RBP20.34■□□□□ 0.85
UPF3A-208ENST00000484246 ERFEQ4G0M1 354 aa20.34■□□□□ 0.85
UPF3A-208ENST00000484246 DALRD3Q5D0E6 543 aaKnown RBP20.34■□□□□ 0.85
UPF3A-208ENST00000484246 NUTM1Q86Y26 1132 aa20.34■□□□□ 0.85
UPF3A-208ENST00000484246 SH3TC1Q8TE82 1336 aa20.33■□□□□ 0.85
UPF3A-208ENST00000484246 PI4KAP2A4QPH2 592 aa20.33■□□□□ 0.85
UPF3A-208ENST00000484246 FAM177BA6PVY3 158 aa20.33■□□□□ 0.85
UPF3A-208ENST00000484246 GTF2E1P29083 439 aaPredicted RBP20.33■□□□□ 0.85
UPF3A-208ENST00000484246 PELP1Q8IZL8 1130 aaKnown RBP20.33■□□□□ 0.85
UPF3A-208ENST00000484246 PI4KAP1Q8N8J0 262 aa20.33■□□□□ 0.85
UPF3A-208ENST00000484246 CCDC191Q8NCU4 936 aa20.33■□□□□ 0.85
UPF3A-208ENST00000484246 MASTLQ96GX5 879 aa20.33■□□□□ 0.85
UPF3A-208ENST00000484246 BCS1LQ9Y276 419 aa20.33■□□□□ 0.85
UPF3A-208ENST00000484246 MAP3K2Q9Y2U5 619 aa20.33■□□□□ 0.85
UPF3A-208ENST00000484246 TNRC6CQ9HCJ0 1690 aaKnown RBP20.32■□□□□ 0.84
UPF3A-208ENST00000484246 NPR1P16066 1061 aa20.32■□□□□ 0.84
UPF3A-208ENST00000484246 TTLL6Q8N841 843 aa20.32■□□□□ 0.84
UPF3A-208ENST00000484246 ATP5J2-PTCD1G3V325 749 aa20.31■□□□□ 0.84
UPF3A-208ENST00000484246 ALDH1L2Q3SY69 923 aa20.31■□□□□ 0.84
UPF3A-208ENST00000484246 CNKSR1Q969H4 720 aa20.31■□□□□ 0.84
UPF3A-208ENST00000484246 MYD88Q99836 296 aa20.31■□□□□ 0.84
UPF3A-208ENST00000484246 TRMT112Q9UI30 125 aaKnown RBP20.31■□□□□ 0.84
UPF3A-208ENST00000484246 HOXA10P31260 410 aaPredicted RBP20.3■□□□□ 0.84
UPF3A-208ENST00000484246 FKBP5Q13451 457 aaPredicted RBP20.3■□□□□ 0.84
UPF3A-208ENST00000484246 IGKV5-2P06315 115 aa20.29■□□□□ 0.84
UPF3A-208ENST00000484246 MRPL50Q8N5N7 158 aaKnown RBP20.29■□□□□ 0.84
UPF3A-208ENST00000484246 ZBTB38Q8NAP3 1195 aaPredicted RBP20.29■□□□□ 0.84
UPF3A-208ENST00000484246 DNAAF4Q8WXU2 420 aa20.29■□□□□ 0.84
UPF3A-208ENST00000484246 CWC25Q9NXE8 425 aaPredicted RBP20.29■□□□□ 0.84
UPF3A-208ENST00000484246 ARFGEF1Q9Y6D6 1849 aa20.28■□□□□ 0.84
UPF3A-208ENST00000484246 BRPF1P55201 1214 aaPredicted RBP20.28■□□□□ 0.84
UPF3A-208ENST00000484246 NEXNQ0ZGT2 675 aa20.28■□□□□ 0.84
UPF3A-208ENST00000484246 SSH1Q8WYL5 1049 aa20.28■□□□□ 0.84
UPF3A-208ENST00000484246 WWC3Q9ULE0 1092 aa20.28■□□□□ 0.84
UPF3A-208ENST00000484246 CACNA1FO60840 1977 aa20.28■□□□□ 0.84
UPF3A-208ENST00000484246 PCCAP05165 728 aaPredicted RBP20.27■□□□□ 0.84
UPF3A-208ENST00000484246 ZNF622Q969S3 477 aaKnown RBP eCLIP20.27■□□□□ 0.842e-6■■■■□ 19.4
UPF3A-208ENST00000484246 NLRP3Q96P20 1036 aa20.27■□□□□ 0.84
UPF3A-208ENST00000484246 PTPRCP08575 1304 aa20.27■□□□□ 0.83
UPF3A-208ENST00000484246 NEURL1BA8MQ27 555 aa20.26■□□□□ 0.83
UPF3A-208ENST00000484246 HSP90B1P14625 803 aaKnown RBP20.26■□□□□ 0.83
UPF3A-208ENST00000484246 PRPF40BQ6NWY9 871 aaKnown RBP20.26■□□□□ 0.83
UPF3A-208ENST00000484246 C3orf67Q6ZVT6 689 aa20.26■□□□□ 0.83
UPF3A-208ENST00000484246 LINS1Q8NG48 757 aa20.26■□□□□ 0.83
UPF3A-208ENST00000484246 C7orf43Q8WVR3 580 aa20.25■□□□□ 0.83
UPF3A-208ENST00000484246 CRAMP1Q96RY5 1269 aa20.25■□□□□ 0.83
UPF3A-208ENST00000484246 CDHR2Q9BYE9 1310 aa20.25■□□□□ 0.83
UPF3A-208ENST00000484246 HCLS1P14317 486 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-208ENST00000484246 ALDH1B1P30837 517 aa20.24■□□□□ 0.83
UPF3A-208ENST00000484246 SF3B3Q15393 1217 aaKnown RBP20.24■□□□□ 0.83
UPF3A-208ENST00000484246 SOGA3Q5TF21 947 aa20.24■□□□□ 0.83
UPF3A-208ENST00000484246 SYNE4Q8N205 404 aa20.24■□□□□ 0.83
UPF3A-208ENST00000484246 RPGRQ92834 1020 aaKnown RBP20.24■□□□□ 0.83
UPF3A-208ENST00000484246 FAM89AQ96GI7 184 aa20.24■□□□□ 0.83
UPF3A-208ENST00000484246 GOLGB1Q14789 3259 aaKnown RBP20.24■□□□□ 0.83
UPF3A-208ENST00000484246 UTRNP46939 3433 aa20.24■□□□□ 0.83
UPF3A-208ENST00000484246 LAMB2P55268 1798 aa20.23■□□□□ 0.83
UPF3A-208ENST00000484246 IRS4O14654 1257 aaPredicted RBP20.23■□□□□ 0.83
UPF3A-208ENST00000484246 BEND3Q5T5X7 828 aa20.23■□□□□ 0.83
UPF3A-208ENST00000484246 SNED1Q8TER0 1413 aa20.22■□□□□ 0.83
UPF3A-208ENST00000484246 RARSP54136 660 aaKnown RBP20.22■□□□□ 0.83
UPF3A-208ENST00000484246 GCKRQ14397 625 aa20.22■□□□□ 0.83
UPF3A-208ENST00000484246 CWF19L2Q2TBE0 894 aaKnown RBP20.22■□□□□ 0.83
UPF3A-208ENST00000484246 RBM17Q96I25 401 aaKnown RBP20.22■□□□□ 0.83
UPF3A-208ENST00000484246 SMC4Q9NTJ3 1288 aa20.22■□□□□ 0.83
UPF3A-208ENST00000484246 LTBP3Q9NS15 1303 aa20.22■□□□□ 0.83
UPF3A-208ENST00000484246 F6X3S4 739 aa20.21■□□□□ 0.83
UPF3A-208ENST00000484246 DDX60Q8IY21 1712 aaKnown RBP20.21■□□□□ 0.83
UPF3A-208ENST00000484246 H7C1W4 665 aa20.2■□□□□ 0.82
UPF3A-208ENST00000484246 ALDH1L1O75891 902 aa20.2■□□□□ 0.82
UPF3A-208ENST00000484246 CC2D2BQ6DHV5 1058 aa20.2■□□□□ 0.82
UPF3A-208ENST00000484246 ARHGAP27Q6ZUM4 889 aa20.2■□□□□ 0.82
UPF3A-208ENST00000484246 NFKBIEO00221 500 aa20.19■□□□□ 0.82
UPF3A-208ENST00000484246 PDE8AO60658 829 aa20.19■□□□□ 0.82
UPF3A-208ENST00000484246 CASP7P55210 303 aa20.19■□□□□ 0.82
UPF3A-208ENST00000484246 PLA2G12BQ9BX93 195 aa20.19■□□□□ 0.82
UPF3A-208ENST00000484246 BCL2L13Q9BXK5 485 aa20.19■□□□□ 0.82
UPF3A-208ENST00000484246 ABCC4O15439 1325 aa20.19■□□□□ 0.82
UPF3A-208ENST00000484246 KIF16BQ96L93 1317 aa20.19■□□□□ 0.82
UPF3A-208ENST00000484246 C21orf2O43822 256 aa20.18■□□□□ 0.82
UPF3A-208ENST00000484246 CCDC93Q567U6 631 aa20.18■□□□□ 0.82
UPF3A-208ENST00000484246 RTL9Q8NET4 1388 aa20.18■□□□□ 0.82
UPF3A-208ENST00000484246 GRAPQ13588 217 aa20.17■□□□□ 0.82
UPF3A-208ENST00000484246 GRIPAP1Q4V328 841 aa20.17■□□□□ 0.82
UPF3A-208ENST00000484246 DDX46Q7L014 1031 aaKnown RBP20.17■□□□□ 0.82
UPF3A-208ENST00000484246 TMC4Q7Z404 712 aa20.17■□□□□ 0.82
UPF3A-208ENST00000484246 ZNF784Q8NCA9 323 aaPredicted RBP20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms