RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 BTAF1O14981 1849 aa32.26■■■□□ 2.75
SHOX2-204ENST00000483851 NUP98P52948 1817 aa32.25■■■□□ 2.75
SHOX2-204ENST00000483851 FOXO4P98177 505 aa32.25■■■□□ 2.75
SHOX2-204ENST00000483851 CLASRPQ8N2M8 674 aaKnown RBP32.25■■■□□ 2.75
SHOX2-204ENST00000483851 IL1RAPL2Q9NP60 686 aa32.25■■■□□ 2.75
SHOX2-204ENST00000483851 RFX5P48382 616 aaPredicted RBP32.24■■■□□ 2.75
SHOX2-204ENST00000483851 SEPT12Q8IYM1 358 aa32.24■■■□□ 2.75
SHOX2-204ENST00000483851 PA2G4Q9UQ80 394 aaKnown RBP32.24■■■□□ 2.75
SHOX2-204ENST00000483851 USP42Q9H9J4 1324 aaKnown RBP32.23■■■□□ 2.75
SHOX2-204ENST00000483851 TBC1D32Q96NH3 1257 aa32.23■■■□□ 2.75
SHOX2-204ENST00000483851 PLA2G12BQ9BX93 195 aa32.23■■■□□ 2.75
SHOX2-204ENST00000483851 TUBGCP6Q96RT7 1819 aa32.23■■■□□ 2.75
SHOX2-204ENST00000483851 SDSP20132 328 aa32.23■■■□□ 2.75
SHOX2-204ENST00000483851 TBC1D9Q6ZT07 1266 aa32.23■■■□□ 2.75
SHOX2-204ENST00000483851 ZBTB38Q8NAP3 1195 aaPredicted RBP32.23■■■□□ 2.75
SHOX2-204ENST00000483851 SBF2Q86WG5 1849 aa32.22■■■□□ 2.75
SHOX2-204ENST00000483851 MYH14Q7Z406 1995 aaKnown RBP32.22■■■□□ 2.75
SHOX2-204ENST00000483851 ARXQ96QS3 562 aa32.22■■■□□ 2.75
SHOX2-204ENST00000483851 BCL11AQ9H165 835 aa32.22■■■□□ 2.75
SHOX2-204ENST00000483851 CDHR2Q9BYE9 1310 aa32.21■■■□□ 2.75
SHOX2-204ENST00000483851 HLFQ16534 295 aa32.21■■■□□ 2.75
SHOX2-204ENST00000483851 JARID2Q92833 1246 aaPredicted RBP32.21■■■□□ 2.75
SHOX2-204ENST00000483851 TTC41PQ6P2S7 1318 aa32.21■■■□□ 2.75
SHOX2-204ENST00000483851 LMBR1LQ6UX01 489 aa32.2■■■□□ 2.75
SHOX2-204ENST00000483851 NLRP10Q86W26 655 aa32.2■■■□□ 2.75
SHOX2-204ENST00000483851 CNTNAP4Q9C0A0 1308 aa32.2■■■□□ 2.75
SHOX2-204ENST00000483851 PTPN12Q05209 780 aaKnown RBP32.2■■■□□ 2.74
SHOX2-204ENST00000483851 CASC1Q6TDU7 716 aa32.2■■■□□ 2.74
SHOX2-204ENST00000483851 RGL2O15211 777 aa32.19■■■□□ 2.74
SHOX2-204ENST00000483851 SASH1O94885 1247 aa32.18■■■□□ 2.74
SHOX2-204ENST00000483851 RC3H1Q5TC82 1133 aaKnown RBP32.18■■■□□ 2.74
SHOX2-204ENST00000483851 TBC1D2BQ9UPU7 963 aa32.18■■■□□ 2.74
SHOX2-204ENST00000483851 ZNF34Q8IZ26 560 aa32.17■■■□□ 2.74
SHOX2-204ENST00000483851 MFAP1P55081 439 aaKnown RBP32.16■■■□□ 2.74
SHOX2-204ENST00000483851 NUTM1Q86Y26 1132 aa32.16■■■□□ 2.74
SHOX2-204ENST00000483851 GPATCH3Q96I76 525 aa32.16■■■□□ 2.74
SHOX2-204ENST00000483851 LY75O60449 1722 aa32.15■■■□□ 2.74
SHOX2-204ENST00000483851 C22orf23Q9BZE7 217 aa32.14■■■□□ 2.74
SHOX2-204ENST00000483851 IFIT2P09913 472 aaKnown RBP32.14■■■□□ 2.74
SHOX2-204ENST00000483851 LINC00116Q8NCU8 138 aa32.14■■■□□ 2.74
SHOX2-204ENST00000483851 FBXO3Q9UK99 471 aa32.14■■■□□ 2.74
SHOX2-204ENST00000483851 ERC2O15083 957 aa32.13■■■□□ 2.73
SHOX2-204ENST00000483851 CAMTA2O94983 1202 aa32.13■■■□□ 2.73
SHOX2-204ENST00000483851 PI4K2BQ8TCG2 481 aa32.13■■■□□ 2.73
SHOX2-204ENST00000483851 GLRX3O76003 335 aaKnown RBP32.12■■■□□ 2.73
SHOX2-204ENST00000483851 CSF1RP07333 972 aa32.12■■■□□ 2.73
SHOX2-204ENST00000483851 NBR1Q14596 966 aa32.12■■■□□ 2.73
SHOX2-204ENST00000483851 PARP10Q53GL7 1025 aa32.12■■■□□ 2.73
SHOX2-204ENST00000483851 ZNF772Q68DY9 489 aaPredicted RBP32.12■■■□□ 2.73
SHOX2-204ENST00000483851 AK7Q96M32 723 aa32.12■■■□□ 2.73
SHOX2-204ENST00000483851 BCL11BQ9C0K0 894 aaPredicted RBP32.12■■■□□ 2.73
SHOX2-204ENST00000483851 SIL1Q9H173 461 aa32.12■■■□□ 2.73
SHOX2-204ENST00000483851 BCORQ6W2J9 1755 aa32.11■■■□□ 2.73
SHOX2-204ENST00000483851 GPTP24298 496 aa32.11■■■□□ 2.73
SHOX2-204ENST00000483851 RTL5Q5HYW3 569 aaPredicted RBP32.11■■■□□ 2.73
SHOX2-204ENST00000483851 CLEC4GQ6UXB4 293 aa32.11■■■□□ 2.73
SHOX2-204ENST00000483851 PTF1AQ7RTS3 328 aa32.11■■■□□ 2.73
SHOX2-204ENST00000483851 ZNF652Q9Y2D9 606 aa32.11■■■□□ 2.73
SHOX2-204ENST00000483851 RBM25P49756 843 aaKnown RBP32.1■■■□□ 2.73
SHOX2-204ENST00000483851 KLHDC4Q8TBB5 520 aa32.1■■■□□ 2.73
SHOX2-204ENST00000483851 FAM89AQ96GI7 184 aa32.1■■■□□ 2.73
SHOX2-204ENST00000483851 ECHDC1Q9NTX5 307 aa32.1■■■□□ 2.73
SHOX2-204ENST00000483851 AACSQ86V21 672 aa32.1■■■□□ 2.73
SHOX2-204ENST00000483851 CIAO1O76071 339 aa32.09■■■□□ 2.73
SHOX2-204ENST00000483851 FAM196AQ6ZSG2 479 aa32.09■■■□□ 2.73
SHOX2-204ENST00000483851 CHMP3Q9Y3E7 222 aa32.09■■■□□ 2.73
SHOX2-204ENST00000483851 TSHZ3Q63HK5 1081 aa32.08■■■□□ 2.73
SHOX2-204ENST00000483851 TRMT112Q9UI30 125 aaKnown RBP32.08■■■□□ 2.73
SHOX2-204ENST00000483851 FAM182BQ5T319 152 aa32.08■■■□□ 2.73
SHOX2-204ENST00000483851 EAF2Q96CJ1 260 aaPredicted RBP32.08■■■□□ 2.73
SHOX2-204ENST00000483851 MYH3P11055 1940 aa32.07■■■□□ 2.72
SHOX2-204ENST00000483851 UBN2Q6ZU65 1347 aa32.07■■■□□ 2.72
SHOX2-204ENST00000483851 IL15P40933 162 aaPredicted RBP32.07■■■□□ 2.72
SHOX2-204ENST00000483851 SLC4A3P48751 1232 aa32.07■■■□□ 2.72
SHOX2-204ENST00000483851 CCDC57Q2TAC2 916 aa32.07■■■□□ 2.72
SHOX2-204ENST00000483851 GPR108Q9NPR9 543 aa32.07■■■□□ 2.72
SHOX2-204ENST00000483851 CCNL1Q9UK58 526 aaPredicted RBP32.07■■■□□ 2.72
SHOX2-204ENST00000483851 HSP90B1P14625 803 aaKnown RBP32.06■■■□□ 2.72
SHOX2-204ENST00000483851 RPS6KA4O75676 772 aa32.06■■■□□ 2.72
SHOX2-204ENST00000483851 TRIM6-TRIM34B2RNG4 842 aa32.05■■■□□ 2.72
SHOX2-204ENST00000483851 KRT27Q7Z3Y8 459 aa32.05■■■□□ 2.72
SHOX2-204ENST00000483851 TAF1LQ8IZX4 1826 aa32.05■■■□□ 2.72
SHOX2-204ENST00000483851 EYA2O00167 538 aa32.04■■■□□ 2.72
SHOX2-204ENST00000483851 RBM6P78332 1123 aaKnown RBP32.04■■■□□ 2.72
SHOX2-204ENST00000483851 IRS4O14654 1257 aaPredicted RBP32.03■■■□□ 2.72
SHOX2-204ENST00000483851 PDE8AO60658 829 aa32.03■■■□□ 2.72
SHOX2-204ENST00000483851 CNTROBQ8N137 903 aa32.03■■■□□ 2.72
SHOX2-204ENST00000483851 BRWD3Q6RI45 1802 aa32.03■■■□□ 2.72
SHOX2-204ENST00000483851 AK9Q5TCS8 1911 aa32.03■■■□□ 2.72
SHOX2-204ENST00000483851 REC8O95072 547 aa32.03■■■□□ 2.72
SHOX2-204ENST00000483851 TNNI3KQ59H18 835 aa32.03■■■□□ 2.72
SHOX2-204ENST00000483851 FPGT-TNNI3KV9GXZ4 949 aa32.03■■■□□ 2.72
SHOX2-204ENST00000483851 HMGB2P26583 209 aaKnown RBP32.02■■■□□ 2.72
SHOX2-204ENST00000483851 ATG9AQ7Z3C6 839 aa32.02■■■□□ 2.72
SHOX2-204ENST00000483851 RILPL2Q969X0 211 aa32.02■■■□□ 2.72
SHOX2-204ENST00000483851 UTP14AQ9BVJ6 771 aaKnown RBP32.02■■■□□ 2.72
SHOX2-204ENST00000483851 SH3TC1Q8TE82 1336 aa32.02■■■□□ 2.72
SHOX2-204ENST00000483851 CTSWP56202 376 aa32.01■■■□□ 2.72
SHOX2-204ENST00000483851 TFCP2Q12800 502 aa32.01■■■□□ 2.72
SHOX2-204ENST00000483851 SCN7AQ01118 1682 aa32.01■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms