RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 ANKRD36CQ5JPF3 1778 aa21.77■■□□□ 1.08
USP40-212ENST00000473191 ZNF853P0CG23 659 aa21.77■■□□□ 1.08
USP40-212ENST00000473191 DDX21Q9NR30 783 aaKnown RBP eCLIP21.77■■□□□ 1.08
USP40-212ENST00000473191 VEGFAP15692 232 aaPredicted RBP21.76■■□□□ 1.07
USP40-212ENST00000473191 FKBP4Q02790 459 aaKnown RBP eCLIP21.76■■□□□ 1.07
USP40-212ENST00000473191 SOGA3Q5TF21 947 aa21.76■■□□□ 1.07
USP40-212ENST00000473191 HDGFL1Q5TGJ6 251 aa21.76■■□□□ 1.07
USP40-212ENST00000473191 RIC1Q4ADV7 1423 aa21.75■■□□□ 1.07
USP40-212ENST00000473191 TCERG1O14776 1098 aaKnown RBP21.75■■□□□ 1.07
USP40-212ENST00000473191 ALDH1B1P30837 517 aa21.75■■□□□ 1.07
USP40-212ENST00000473191 DUSP27Q5VZP5 1158 aa21.75■■□□□ 1.07
USP40-212ENST00000473191 COL4A5P29400 1685 aa21.75■■□□□ 1.07
USP40-212ENST00000473191 APLP1P51693 650 aa21.74■■□□□ 1.07
USP40-212ENST00000473191 DPY19L2Q6NUT2 758 aa21.74■■□□□ 1.07
USP40-212ENST00000473191 PPP1R42Q7Z4L9 355 aa21.74■■□□□ 1.07
USP40-212ENST00000473191 NLRP10Q86W26 655 aa21.74■■□□□ 1.07
USP40-212ENST00000473191 DNAJC5GQ8N7S2 189 aa21.74■■□□□ 1.07
USP40-212ENST00000473191 RPGRQ92834 1020 aaKnown RBP21.74■■□□□ 1.07
USP40-212ENST00000473191 UTP14AQ9BVJ6 771 aaKnown RBP21.74■■□□□ 1.07
USP40-212ENST00000473191 ZNF541Q9H0D2 1346 aa21.74■■□□□ 1.07
USP40-212ENST00000473191 LAMB2P55268 1798 aa21.74■■□□□ 1.07
USP40-212ENST00000473191 ELL2O00472 640 aaPredicted RBP21.73■■□□□ 1.07
USP40-212ENST00000473191 POTEIP0CG38 1075 aa21.73■■□□□ 1.07
USP40-212ENST00000473191 POTEJP0CG39 1038 aa21.73■■□□□ 1.07
USP40-212ENST00000473191 HOXA10P31260 410 aaPredicted RBP21.73■■□□□ 1.07
USP40-212ENST00000473191 FSTL1Q12841 308 aa21.73■■□□□ 1.07
USP40-212ENST00000473191 PARP10Q53GL7 1025 aa21.73■■□□□ 1.07
USP40-212ENST00000473191 HCLS1P14317 486 aaPredicted RBP21.72■■□□□ 1.07
USP40-212ENST00000473191 TCIRG1Q13488 830 aa21.72■■□□□ 1.07
USP40-212ENST00000473191 SLC10A5Q5PT55 438 aa21.71■■□□□ 1.07
USP40-212ENST00000473191 RTKN2Q8IZC4 609 aa21.71■■□□□ 1.07
USP40-212ENST00000473191 SMC1BQ8NDV3 1235 aa21.71■■□□□ 1.07
USP40-212ENST00000473191 C8orf58Q8NAV2 365 aa21.7■■□□□ 1.06
USP40-212ENST00000473191 IFT57Q9NWB7 429 aa21.7■■□□□ 1.06
USP40-212ENST00000473191 TAF1P21675 1872 aa21.69■■□□□ 1.06
USP40-212ENST00000473191 ATP5J2-PTCD1G3V325 749 aa21.69■■□□□ 1.06
USP40-212ENST00000473191 PPEF1O14829 653 aaPredicted RBP21.69■■□□□ 1.06
USP40-212ENST00000473191 HOXB7P09629 217 aa21.69■■□□□ 1.06
USP40-212ENST00000473191 IARSP41252 1262 aaKnown RBP21.69■■□□□ 1.06
USP40-212ENST00000473191 RBM17Q96I25 401 aaKnown RBP21.69■■□□□ 1.06
USP40-212ENST00000473191 NLRP3Q96P20 1036 aa21.69■■□□□ 1.06
USP40-212ENST00000473191 CRAMP1Q96RY5 1269 aa21.69■■□□□ 1.06
USP40-212ENST00000473191 PHAXQ9H814 394 aaKnown RBP21.69■■□□□ 1.06
USP40-212ENST00000473191 DBF4Q9UBU7 674 aaPredicted RBP21.69■■□□□ 1.06
USP40-212ENST00000473191 ZEB1P37275 1124 aaPredicted RBP21.68■■□□□ 1.06
USP40-212ENST00000473191 HSP90AB3PQ58FF7 597 aa21.68■■□□□ 1.06
USP40-212ENST00000473191 ANKRD13DQ6ZTN6 518 aa21.68■■□□□ 1.06
USP40-212ENST00000473191 PLBD2Q8NHP8 589 aa21.68■■□□□ 1.06
USP40-212ENST00000473191 TRMT112Q9UI30 125 aaKnown RBP21.68■■□□□ 1.06
USP40-212ENST00000473191 ABCC4O15439 1325 aa21.68■■□□□ 1.06
USP40-212ENST00000473191 DDX60Q8IY21 1712 aaKnown RBP21.67■■□□□ 1.06
USP40-212ENST00000473191 COL4A1P02462 1669 aa21.67■■□□□ 1.06
USP40-212ENST00000473191 ZNF316A6NFI3 1004 aaPredicted RBP21.67■■□□□ 1.06
USP40-212ENST00000473191 TSPYL6Q8N831 410 aa21.67■■□□□ 1.06
USP40-212ENST00000473191 PSMD1Q99460 953 aa21.67■■□□□ 1.06
USP40-212ENST00000473191 GNAI1P63096 354 aa21.66■■□□□ 1.06
USP40-212ENST00000473191 ISCA1Q9BUE6 129 aa21.66■■□□□ 1.06
USP40-212ENST00000473191 FZD9O00144 591 aa21.65■■□□□ 1.06
USP40-212ENST00000473191 RTL5Q5HYW3 569 aaPredicted RBP21.65■■□□□ 1.06
USP40-212ENST00000473191 TSR2Q969E8 191 aaKnown RBP21.65■■□□□ 1.06
USP40-212ENST00000473191 SH3TC1Q8TE82 1336 aa21.64■■□□□ 1.05
USP40-212ENST00000473191 FAM89AQ96GI7 184 aa21.64■■□□□ 1.05
USP40-212ENST00000473191 HYPKQ9NX55 129 aa21.64■■□□□ 1.05
USP40-212ENST00000473191 L3MBTL3Q96JM7 780 aaPredicted RBP21.63■■□□□ 1.05
USP40-212ENST00000473191 RNF123Q5XPI4 1314 aa21.62■■□□□ 1.05
USP40-212ENST00000473191 CC2D2BQ6DHV5 1058 aa21.62■■□□□ 1.05
USP40-212ENST00000473191 TAF1DQ9H5J8 278 aaPredicted RBP21.62■■□□□ 1.05
USP40-212ENST00000473191 MRS2Q9HD23 443 aa21.62■■□□□ 1.05
USP40-212ENST00000473191 ATP6V0A2Q9Y487 856 aa21.62■■□□□ 1.05
USP40-212ENST00000473191 LTBP1Q14766 1721 aa21.61■■□□□ 1.05
USP40-212ENST00000473191 WWC1Q8IX03 1113 aa21.61■■□□□ 1.05
USP40-212ENST00000473191 SCN4AP35499 1836 aa21.61■■□□□ 1.05
USP40-212ENST00000473191 CALD1Q05682 793 aaKnown RBP21.6■■□□□ 1.05
USP40-212ENST00000473191 AOC3Q16853 763 aa21.6■■□□□ 1.05
USP40-212ENST00000473191 KLRG1Q96E93 195 aa21.6■■□□□ 1.05
USP40-212ENST00000473191 CHADLQ6NUI6 762 aa21.59■■□□□ 1.05
USP40-212ENST00000473191 RIC3Q7Z5B4 369 aa21.59■■□□□ 1.05
USP40-212ENST00000473191 LARGE2Q8N3Y3 721 aa21.59■■□□□ 1.05
USP40-212ENST00000473191 JARID2Q92833 1246 aaPredicted RBP21.59■■□□□ 1.05
USP40-212ENST00000473191 SALL2Q9Y467 1007 aaPredicted RBP21.59■■□□□ 1.05
USP40-212ENST00000473191 GRAPQ13588 217 aa21.58■■□□□ 1.05
USP40-212ENST00000473191 EAPPQ56P03 285 aaPredicted RBP21.58■■□□□ 1.05
USP40-212ENST00000473191 GRAPLQ8TC17 118 aaPredicted RBP21.58■■□□□ 1.05
USP40-212ENST00000473191 JDP2Q8WYK2 163 aa21.58■■□□□ 1.05
USP40-212ENST00000473191 CELF1Q92879 486 aaKnown RBP21.58■■□□□ 1.05
USP40-212ENST00000473191 MYD88Q99836 296 aa21.58■■□□□ 1.05
USP40-212ENST00000473191 GJA3Q9Y6H8 435 aa21.58■■□□□ 1.05
USP40-212ENST00000473191 ADAMTSL1Q8N6G6 1762 aa21.58■■□□□ 1.04
USP40-212ENST00000473191 IQCA1LA6NCM1 817 aa21.57■■□□□ 1.04
USP40-212ENST00000473191 PPIP5K2O43314 1243 aa21.57■■□□□ 1.04
USP40-212ENST00000473191 ANP32CO43423 234 aa21.57■■□□□ 1.04
USP40-212ENST00000473191 DDX46Q7L014 1031 aaKnown RBP21.57■■□□□ 1.04
USP40-212ENST00000473191 SP8Q8IXZ3 490 aa21.57■■□□□ 1.04
USP40-212ENST00000473191 DUOX1Q9NRD9 1551 aa21.57■■□□□ 1.04
USP40-212ENST00000473191 BBOX1O75936 387 aa21.56■■□□□ 1.04
USP40-212ENST00000473191 EPHX2P34913 555 aa21.56■■□□□ 1.04
USP40-212ENST00000473191 GOLGA2Q08379 1002 aa21.56■■□□□ 1.04
USP40-212ENST00000473191 CCDC27Q2M243 656 aa21.56■■□□□ 1.04
USP40-212ENST00000473191 GPC2Q8N158 579 aa21.56■■□□□ 1.04
USP40-212ENST00000473191 HACL1Q9UJ83 578 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms