RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 MYD88Q99836 296 aa18.55■□□□□ 0.56
SQSTM1-205ENST00000464493 METTL22Q9BUU2 404 aaPredicted RBP18.55■□□□□ 0.56
SQSTM1-205ENST00000464493 PIM2Q9P1W9 311 aa18.55■□□□□ 0.56
SQSTM1-205ENST00000464493 WWC3Q9ULE0 1092 aa18.55■□□□□ 0.56
SQSTM1-205ENST00000464493 ANKRD31Q8N7Z5 1873 aa18.54■□□□□ 0.56
SQSTM1-205ENST00000464493 ADCY9O60503 1353 aa18.54■□□□□ 0.56
SQSTM1-205ENST00000464493 MRPL50Q8N5N7 158 aaKnown RBP18.53■□□□□ 0.56
SQSTM1-205ENST00000464493 SSH1Q8WYL5 1049 aa18.53■□□□□ 0.56
SQSTM1-205ENST00000464493 TRMT112Q9UI30 125 aaKnown RBP18.53■□□□□ 0.56
SQSTM1-205ENST00000464493 RNF123Q5XPI4 1314 aa18.52■□□□□ 0.56
SQSTM1-205ENST00000464493 KLRG2A4D1S0 409 aaPredicted RBP18.52■□□□□ 0.56
SQSTM1-205ENST00000464493 YBX3P16989 372 aaKnown RBP eCLIP18.52■□□□□ 0.56
SQSTM1-205ENST00000464493 NEXNQ0ZGT2 675 aa18.52■□□□□ 0.56
SQSTM1-205ENST00000464493 ALDH1L2Q3SY69 923 aa18.52■□□□□ 0.56
SQSTM1-205ENST00000464493 SLC10A5Q5PT55 438 aa18.51■□□□□ 0.55
SQSTM1-205ENST00000464493 CCDC191Q8NCU4 936 aa18.51■□□□□ 0.55
SQSTM1-205ENST00000464493 DNAAF4Q8WXU2 420 aa18.51■□□□□ 0.55
SQSTM1-205ENST00000464493 ZNF622Q969S3 477 aaKnown RBP eCLIP18.51■□□□□ 0.55
SQSTM1-205ENST00000464493 BCS1LQ9Y276 419 aa18.51■□□□□ 0.55
SQSTM1-205ENST00000464493 ABCC12Q96J65 1359 aa18.51■□□□□ 0.55
SQSTM1-205ENST00000464493 SH3TC1Q8TE82 1336 aa18.5■□□□□ 0.55
SQSTM1-205ENST00000464493 BRCA1P38398 1863 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-205ENST00000464493 GRIN3BO60391 1043 aa18.5■□□□□ 0.55
SQSTM1-205ENST00000464493 SRGNP10124 158 aa18.5■□□□□ 0.55
SQSTM1-205ENST00000464493 DALRD3Q5D0E6 543 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-205ENST00000464493 MASTLQ96GX5 879 aa18.5■□□□□ 0.55
SQSTM1-205ENST00000464493 CWC25Q9NXE8 425 aaPredicted RBP18.5■□□□□ 0.55
SQSTM1-205ENST00000464493 IGKV5-2P06315 115 aa18.49■□□□□ 0.55
SQSTM1-205ENST00000464493 SYNE4Q8N205 404 aa18.49■□□□□ 0.55
SQSTM1-205ENST00000464493 TTLL6Q8N841 843 aa18.49■□□□□ 0.55
SQSTM1-205ENST00000464493 FAM89AQ96GI7 184 aa18.49■□□□□ 0.55
SQSTM1-205ENST00000464493 BCL2L13Q9BXK5 485 aa18.49■□□□□ 0.55
SQSTM1-205ENST00000464493 SMC4Q9NTJ3 1288 aa18.49■□□□□ 0.55
SQSTM1-205ENST00000464493 DLEC1Q9Y238 1755 aa18.48■□□□□ 0.55
SQSTM1-205ENST00000464493 F6X3S4 739 aa18.48■□□□□ 0.55
SQSTM1-205ENST00000464493 NPR1P16066 1061 aa18.48■□□□□ 0.55
SQSTM1-205ENST00000464493 STYK1Q6J9G0 422 aa18.48■□□□□ 0.55
SQSTM1-205ENST00000464493 ZBTB38Q8NAP3 1195 aaPredicted RBP18.48■□□□□ 0.55
SQSTM1-205ENST00000464493 NLRP3Q96P20 1036 aa18.48■□□□□ 0.55
SQSTM1-205ENST00000464493 RIC1Q4ADV7 1423 aa18.48■□□□□ 0.55
SQSTM1-205ENST00000464493 COL11A2P13942 1736 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-205ENST00000464493 HCLS1P14317 486 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-205ENST00000464493 RARSP54136 660 aaKnown RBP18.47■□□□□ 0.55
SQSTM1-205ENST00000464493 CWF19L2Q2TBE0 894 aaKnown RBP18.47■□□□□ 0.55
SQSTM1-205ENST00000464493 RTL5Q5HYW3 569 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-205ENST00000464493 CNKSR1Q969H4 720 aa18.47■□□□□ 0.55
SQSTM1-205ENST00000464493 PTPRCP08575 1304 aa18.47■□□□□ 0.55
SQSTM1-205ENST00000464493 NEURL1BA8MQ27 555 aa18.46■□□□□ 0.55
SQSTM1-205ENST00000464493 PCCAP05165 728 aaPredicted RBP18.46■□□□□ 0.55
SQSTM1-205ENST00000464493 CRY2Q49AN0 593 aa18.46■□□□□ 0.55
SQSTM1-205ENST00000464493 LINS1Q8NG48 757 aa18.46■□□□□ 0.55
SQSTM1-205ENST00000464493 TNRC6CQ9HCJ0 1690 aaKnown RBP18.45■□□□□ 0.54
SQSTM1-205ENST00000464493 BRPF1P55201 1214 aaPredicted RBP18.45■□□□□ 0.54
SQSTM1-205ENST00000464493 C3orf67Q6ZVT6 689 aa18.45■□□□□ 0.54
SQSTM1-205ENST00000464493 IRS4O14654 1257 aaPredicted RBP18.44■□□□□ 0.54
SQSTM1-205ENST00000464493 HSP90B1P14625 803 aaKnown RBP18.44■□□□□ 0.54
SQSTM1-205ENST00000464493 ALDH1B1P30837 517 aa18.44■□□□□ 0.54
SQSTM1-205ENST00000464493 BEND3Q5T5X7 828 aa18.44■□□□□ 0.54
SQSTM1-205ENST00000464493 SLC4A10Q6U841 1118 aa18.44■□□□□ 0.54
SQSTM1-205ENST00000464493 JARID2Q92833 1246 aaPredicted RBP18.44■□□□□ 0.54
SQSTM1-205ENST00000464493 RPGRQ92834 1020 aaKnown RBP18.44■□□□□ 0.54
SQSTM1-205ENST00000464493 ARFGEF1Q9Y6D6 1849 aa18.44■□□□□ 0.54
SQSTM1-205ENST00000464493 HOXA10P31260 410 aaPredicted RBP18.43■□□□□ 0.54
SQSTM1-205ENST00000464493 GCKRQ14397 625 aa18.43■□□□□ 0.54
SQSTM1-205ENST00000464493 RBM17Q96I25 401 aaKnown RBP18.43■□□□□ 0.54
SQSTM1-205ENST00000464493 NOB1Q9ULX3 412 aaKnown RBP18.43■□□□□ 0.54
SQSTM1-205ENST00000464493 PRPF40BQ6NWY9 871 aaKnown RBP18.42■□□□□ 0.54
SQSTM1-205ENST00000464493 ARHGAP27Q6ZUM4 889 aa18.42■□□□□ 0.54
SQSTM1-205ENST00000464493 DDX60Q8IY21 1712 aaKnown RBP18.41■□□□□ 0.54
SQSTM1-205ENST00000464493 H7C1W4 665 aa18.41■□□□□ 0.54
SQSTM1-205ENST00000464493 CRAMP1Q96RY5 1269 aa18.41■□□□□ 0.54
SQSTM1-205ENST00000464493 SLX4Q8IY92 1834 aa18.41■□□□□ 0.54
SQSTM1-205ENST00000464493 CDHR2Q9BYE9 1310 aa18.41■□□□□ 0.54
SQSTM1-205ENST00000464493 LAMB2P55268 1798 aa18.4■□□□□ 0.54
SQSTM1-205ENST00000464493 CACNA1SQ13698 1873 aa18.4■□□□□ 0.54
SQSTM1-205ENST00000464493 C21orf2O43822 256 aa18.4■□□□□ 0.54
SQSTM1-205ENST00000464493 BCAR3O75815 825 aa18.4■□□□□ 0.54
SQSTM1-205ENST00000464493 ALDH1L1O75891 902 aa18.4■□□□□ 0.54
SQSTM1-205ENST00000464493 SF3B3Q15393 1217 aaKnown RBP18.4■□□□□ 0.54
SQSTM1-205ENST00000464493 SRCIN1Q9C0H9 1055 aa18.4■□□□□ 0.54
SQSTM1-205ENST00000464493 ZNF219Q9P2Y4 722 aaPredicted RBP18.4■□□□□ 0.54
SQSTM1-205ENST00000464493 PDE8AO60658 829 aa18.39■□□□□ 0.53
SQSTM1-205ENST00000464493 DDX46Q7L014 1031 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-205ENST00000464493 UBE3BQ7Z3V4 1068 aa18.39■□□□□ 0.53
SQSTM1-205ENST00000464493 YTHDC1Q96MU7 727 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-205ENST00000464493 KIF16BQ96L93 1317 aa18.39■□□□□ 0.53
SQSTM1-205ENST00000464493 CHD4Q14839 1912 aa18.39■□□□□ 0.53
SQSTM1-205ENST00000464493 C7orf43Q8WVR3 580 aa18.38■□□□□ 0.53
SQSTM1-205ENST00000464493 ARHGAP45Q92619 1136 aa18.38■□□□□ 0.53
SQSTM1-205ENST00000464493 API5Q9BZZ5 524 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-205ENST00000464493 IPO8O15397 1037 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-205ENST00000464493 CASP7P55210 303 aa18.37■□□□□ 0.53
SQSTM1-205ENST00000464493 C9orf78Q9NZ63 289 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-205ENST00000464493 GRM8O00222 908 aa18.36■□□□□ 0.53
SQSTM1-205ENST00000464493 ABCC4O15439 1325 aa18.36■□□□□ 0.53
SQSTM1-205ENST00000464493 SOGA3Q5TF21 947 aa18.36■□□□□ 0.53
SQSTM1-205ENST00000464493 FRAT1Q92837 279 aaPredicted RBP18.36■□□□□ 0.53
SQSTM1-205ENST00000464493 BBOX1O75936 387 aa18.35■□□□□ 0.53
SQSTM1-205ENST00000464493 CCDC152Q4G0S7 254 aa18.35■□□□□ 0.53
SQSTM1-205ENST00000464493 PLA2G12BQ9BX93 195 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms